Name: Mycobacterium koreense 01-305
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8589

Type strain:

Species: Mycobacterium koreense

Strain Designation: 01-305

Culture col. no.: DSM 45576, KCTC 19819, JCM 19956

Strain history: <- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis)

NCBI tax ID(s): 1069220 (species)

SI-ID 401863

DSM 45576

Section

Mycobacterium koreense 01-305 is an aerobe, mesophilic, rod-shaped human pathogen that was isolated from clinical isolate, human sputum.

rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium koreense**
	Full Scientific Name (LPSN)	Mycobacterium koreense Kim et al. 2012

Synonym

Mycolicibacillus koreensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30313]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %95.026

[Ref.: #30313]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17668]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #17668]

Culture medium growth

[Ref.: #17668]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17668]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17668]	growth	37 °C
[Ref.: #30313]	growth	25-37 °C
[Ref.: #30313]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #17668]	Temperature range	mesophilic
[Ref.: #30313]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #30313]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.939

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30313]		NaCl		growth	5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30313]		catalase	+	1.11.1.6
[Ref.: #30313]		pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17668]	Sample type/isolated from	clinical isolate, human sputum
[Ref.: #17668]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #17668]	Country	Republic of Korea
[Ref.: #17668]	Country ISO 3 Code	KOR
[Ref.: #17668]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human sputum
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Fromhuman sputum.
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17668]	Pathogenicity (human)	yes, in single cases
[Ref.: #17668]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17668]	Mycobacterium koreense strain 01-305 16S ribosomal RNA gene, partial sequence	JF271826	1474	ENA	1069220 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacillus koreensis KCTC 19819	GCA_002104795	contig	GenBank	1069220 tax ID
[Ref.: #66792]	Mycolicibacillus koreensis JCM 19956	GCA_010731835	complete	GenBank	1069220 tax ID	*
[Ref.: #66792]	Mycobacterium koreense strain KCTC 19819	1069220.3	wgs	PATRIC	1069220 tax ID	*
[Ref.: #66792]	Mycolicibacillus koreensis strain JCM 19956	1069220.11	complete	PATRIC	1069220 tax ID	*
[Ref.: #66792]	Mycolicibacillus koreensis DSM 45576	GCA_025822715	scaffold	GenBank	1069220 tax ID	*

[Ref.: #67770]

GC-content

69.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycolicibacillus koreensis strain JCM 19956 PATRIC: 1069220.11
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium koreense JCM 19956 NCBI: GCA_010731835.1
[Ref.: #69480]	motile	no	95.474	no
[Ref.: #69480]	flagellated	no	98.876	no
[Ref.: #69480]	gram-positive	yes	91.184	yes
[Ref.: #69480]	anaerobic	no	98.97	yes
[Ref.: #69480]	aerobic	yes	87.732	no
[Ref.: #69480]	halophile	no	84.494	no
[Ref.: #69480]	spore-forming	no	92.714	no
[Ref.: #69480]	glucose-util	yes	68.566	no
[Ref.: #69480]	thermophile	no	94.671	yes
[Ref.: #69480]	glucose-ferment	no	93.019	no

Availability in culture collections External links

[Ref.: #17668]

Culture collection no.

DSM 45576, KCTC 19819, JCM 19956

[Ref.: #77973]

SI-ID 401863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen.	Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.045070-0	2012	*
Phylogeny	Mycobacterium koreense sp. nov., a slowly growing non-chromogenic species closely related to Mycobacterium triviale.	Kim BJ, Jeong J, Lee SH, Kim SR, Yu HK, Park YG, Kim KJ, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.033274-0	2011	*

References

#17668

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45576

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30313

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26654 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77973

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401863.1 )

#26654

IJSEM 1289 2012 ( DOI 10.1099/ijs.0.033274-0 , PubMed 21784962 )

* These data were automatically processed and therefore are not curated

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Mycolicibacillus koreensis strain JCM 19956

Mycobacterium koreense JCM 19956

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