Mycobacterium arupense (DSM 44942, ATCC BAA-1242, CCUG 58731)

Name: Mycobacterium arupense (DSM 44942, ATCC BAA-1242, CCUG 58731)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8536

Type strain

Strain Designation AR30097

Culture col. no. DSM 44942 ATCC BAA-1242 CCUG 58731 AR30097 JCM 32216

NCBI tax ID(s) 342002

Special Collections DSMZ CCUG JCM Literature strains

Links

Mycobacterium arupense AR30097 is an aerobe, mesophilic, rod-shaped prokaryote that was isolated from tendon.

rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297254

ATCC BAA-1242,DSM 44942,CCUG 58731

@ref 20215

Last LPSN update 2025-12-16 09:48:51

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium arupense

Full scientific name Mycobacterium arupense Cloud et al. 2006

Synonyms (1)

Mycolicibacter arupensis

BacDive ID	Other strains from **Mycobacterium arupense** (4)	Type strain
150162	M. arupense CCUG 39146
154102	M. arupense CCUG 52359
155128	M. arupense CCUG 56544
156291	M. arupense CCUG 61078

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell shape
31755			rod-shaped
125439	positive	93.3
125438		90.5
125438	positive	90.422

Colony morphology

61749

Incubation period5 days

Pigmentation

31755

Productionyes

Multimedia

@ref:	12106
multimedia content:	DSM_44942-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44942-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	12106
multimedia content:	DSM_44942.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44942.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12106	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12106	positive	growth	37	mesophilic
31755	positive	growth	30-37	mesophilic
31755	positive	optimum	30-37	mesophilic
61749	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
31755	positive	optimum	7
31755	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
12106	aerobe
61749	aerobe
125439	obligate aerobe	97.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31755	NaCl	positive	growth	5 %
31755	NaCl	positive	optimum	5 %

Observation

31755

Observationaggregates in chains

Enzymes

@ref	Value	Activity	Ec
31755	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1
#Host Body-Site

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12106	tendon	Florida	USA	USA	North America
61749	Human tendon	Florida	USA	USA	North America
67770	Human tendon		USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence DQ157760 (>99% sequence identity) for Mycolicibacter from Microbeatlas

Aquatic Samples	1264
Soil Samples	1370
Animal Samples	528
Plant Samples	177
Total Samples	3339

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12106	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2582268v1 assembly for Mycolicibacter arupensis DSM 44942	scaffold	GCA_025822685	342002.19	8115862736	342002	67.18
67770	ASM208651v1 assembly for Mycolicibacter arupensis DSM 44942	contig	GCA_002086515	342002.6	8066198146	342002	46.01

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Mycobacterium arupense strain DSM 44942 16S ribosomal RNA gene, partial sequence	EU191910	471	342002
20218	Mycobacterium arupense strain ATCC BAA-1242 16S ribosomal RNA gene, partial sequence	JN571167	479	342002
12106	Mycobacterium arupense strain AR30097 16S ribosomal RNA gene, partial sequence	DQ157760	1487	342002

GC content

@ref	GC-content (mol%)	Method
67770	67.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacter arupensis DSM 44942
NCBI: GCA_025822685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	77.70	no
125439	motility	BacteriaNetⓘ	no	85.10	no
125439	gram_stain	BacteriaNetⓘ	positive	93.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium arupense strain DSM 44942
PATRIC: 342002.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.42	no
125438	anaerobic	anaerobicⓘ	no	94.05	yes
125438	spore-forming	spore-formingⓘ	no	68.91	no
125438	aerobic	aerobicⓘ	yes	82.47	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Mycobacterium minnesotense sp. nov., a photochromogenic bacterium isolated from sphagnum peat bogs.	Hannigan GD, Krivogorsky B, Fordice D, Welch JB, Dahl JL.	Int J Syst Evol Microbiol	10.1099/ijs.0.037291-0	2013
Phylogeny	Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, "Mycobacterium virginiense" sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis.	Vasireddy R, Vasireddy S, Brown-Elliott BA, Wengenack NL, Eke UA, Benwill JL, Turenne C, Wallace RJ.	J Clin Microbiol	10.1128/jcm.00198-16	2016
Phylogeny	Mycobacterium arupense sp. nov., a non-chromogenic bacterium isolated from clinical specimens.	Cloud JL, Meyer JJ, Pounder JI, Jost KC, Sweeney A, Carroll KC, Woods GL	Int J Syst Evol Microbiol	10.1099/ijs.0.64194-0	2006

References

#12106	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44942
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#31755	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28028 (see below)
#61749	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58731
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium arupense (DSM 44942, ATCC BAA-1242, CCUG 58731)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025822685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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