Mycobacterium intracellulare subsp. chimaera (DSM 44623, CIP 107892, CCUG 50989)

Name: Mycobacterium intracellulare subsp. chimaera (DSM 44623, CIP 107892, CCUG 50989)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8528

Type strain

Strain Designation FI-01069

Culture col. no. DSM 44623 CIP 107892 CCUG 50989 FI-01069 JCM 14737

NCBI tax ID(s) 222805

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History <- E. Tortoli; FI-01069 <- Nanetti CIP 107892 <-- E. Tortoli FI-01069 <-- A. Nanetti. CIP <- 2003, E. Tortoli, Firenze, Italy: strain FI-01069 <- A. Nanetti

Links

Mycobacterium intracellulare subsp. chimaera FI-01069 is a microaerophile, ovoid-shaped bacterium that was isolated from bronchial lavage.

ovoid-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132789

NCTC 13781,CIP 107892,DSM 44623,CCUG 50989,JCM 14737

@ref 20215

Last LPSN update 2026-02-09 11:19:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium intracellulare subsp. chimaera

Full scientific name Mycobacterium intracellulare subsp. chimaera (Tortoli et al. 2004) Nouioui et al. 2018

Synonyms (3)

Mycobacterium intracellulare subsp. yongonense
Mycobacterium chimaera
Mycobacterium yongonense

BacDive ID	Other strains from **Mycobacterium intracellulare subsp. chimaera** (5)	Type strain
8527	M. intracellulare subsp. chimaera FI-01129, DSM 44622
8592	M. intracellulare subsp. chimaera 05-1390, DSM 45126, KCTC 19555, JCM 19957
139884	M. intracellulare subsp. chimaera ZUERICH-1, DSM 101591
153794	M. intracellulare subsp. chimaera CCUG 50990
153795	M. intracellulare subsp. chimaera CCUG 50991

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
29977	ovoid-shaped
118232	rod-shaped
125439		positive	96.1

Colony morphology

@ref	Colony color	Incubation period	Medium used
20080		10-14 days	5006
20080		10-14 days	BHI
20080		10-14 days	BUG
20080	Cream (9001)	10-14 days	MB7H9

Pigmentation

29977

Productionno

Multimedia

@ref:	11935
multimedia content:	DSM_44623-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44623-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	11935
multimedia content:	DSM_44623-2.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44623-2.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	11935
multimedia content:	DSM_44623-3.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44623-3.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	11935
multimedia content:	DSM_44623.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44623.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11935	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
20080	BUG
20080	BHI
20080	5006		Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes
20080	MB7H9		Name: Middlebrook 7H9 (MB7H9) Broth Base Composition: Middelbrook 7H9 Broth Base 4.7 g/l Glycerol 2.0 g/l Casaminoacids 11.0 g/l Yeast extract 5.5 g/l Tween80 (20%) 2.5 g/l OADC-Enrichment 100 ml Agar 15.0 g/l Preparation: Dissolve in Milli-Q-H2O. Before Use add 10% OADC stock solution Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Maintenance and revitalization Organisms: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria
36332	MEDIUM 55 - for Mycobacterium
118232	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11935	positive	growth	37
20080	positive	optimum	37
29977	positive	growth	25-37
36332	positive	growth	37
59077	positive	growth	37
67770	positive	growth	37
118232	positive	growth	22-30
118232	negative	growth	10
118232	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
59077	microaerophile
118232	obligate aerobe
125439	obligate aerobe	99

Spore formation

29977

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
118232	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
118232	17632 ChEBI	nitrate	+	reduction
118232	17632 ChEBI	nitrate	-	respiration
118232	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118232	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118232	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
118232	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
118232	caseinase	-	3.4.21.50
29977	catalase	+	1.11.1.6
118232	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118232	gamma-glutamyltransferase	+	2.3.2.2
118232	gelatinase	-
68379	gelatinase	-		from API Coryne
118232	lecithinase	-
118232	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
118232	oxidase	-
118232	protease	-
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
118232	tween esterase	-
118232	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20080	+	+	-	+	-	-	-	-	-	+	-	not determinedn.d.	+	-	-	-	+	+	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20080	not determinedn.d.	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
118232	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	-
#Host Body Product	#Oral cavity and Airways	#Bronchial wash

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
11935	bronchial lavage	Bologna	Italy	ITA	Europe	44.499	11.3276 44.499/11.3276
59077	Human bronchial alveolar lavage,56-yr-old woman	Bologna	Italy	ITA	Europe			2001
67770	Bronchial lavage		Italy	ITA	Europe
118232	Human, Lung	Bologna	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence GQ153281 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	4789
Soil Samples	12779
Animal Samples	3677
Plant Samples	2833
Total Samples	24078

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11935	2	Risk group (German classification) According to TRBA 466
20080	2	German classification According to TRBA 466
118232	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score	IMG accession
66792	ASM221928v1 assembly for Mycobacterium intracellulare subsp. chimaera DSM 44623	complete	GCA_002219285	222805.24	222805	93.94
67770	ASM193809v1 assembly for Mycobacterium intracellulare subsp. chimaera JCM_14737	contig	GCA_001938095		222805	70.12	8034494560
66792	ASM2582278v1 assembly for Mycobacterium intracellulare subsp. chimaera DSM 44623	scaffold	GCA_025822785	222805.269	222805	64.34
67770	ASM210157v1 assembly for Mycobacterium intracellulare subsp. chimaera DSM 44623	contig	GCA_002101575	222805.20	222805	53.06

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Mycobacterium chimaera strain CIP 107892 16S ribosomal RNA gene, partial sequence	AY943208	493	222805
20218	Mycobacterium chimaera strain DSM 446232 16S ribosomal RNA gene, partial sequence	EF521894	1440	222805
20218	Mycobacterium chimaera strain DSM 446232 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	EF521902	438	222805
20218	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence	GQ153281	1495	222805
11935	Mycobacterium chimaera 16S rRNA gene and ITS1, type strain FI-0169T	AJ548480	1766	222805
124043	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence.	GQ153265	1492	53378
124043	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence.	GQ153266	1492	53378
124043	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence.	GQ153267	1492	53378
124043	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence.	GQ153268	1492	53378
124043	Mycobacterium chimaera strain CIP107892 16S ribosomal RNA gene, partial sequence.	GQ153269	1492	53378
124043	Mycobacterium chimaera strain JCM 14737 16S-23S ribosomal RNA intergenic spacer, partial sequence.	KP670346	280	222805

GC content

@ref	GC-content (mol%)	Method
67770	67.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium chimaera strain DSM 44623
PATRIC: 222805.24

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	56.90	no
125439	motility	BacteriaNetⓘ	no	78.50	no
125439	gram_stain	BacteriaNetⓘ	positive	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium intracellulare subsp. chimaera DSM 44623
NCBI: GCA_002219285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.74	no
125438	anaerobic	anaerobicⓘ	no	96.00	yes
125438	aerobic	aerobicⓘ	yes	80.76	no
125438	spore-forming	spore-formingⓘ	no	62.27	yes
125438	thermophilic	thermophileⓘ	no	95.68	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biofilm prevention concentration of clarithromycin against clinically relevant species of nontuberculous mycobacteria.	Senhaji-Kacha A, Akir A, Broncano-Lavado A, Esteban J.	Rev Esp Quimioter	10.37201/req/014.2024	2024
	Mycobacterium intracellulare subsp. chimaera from Cardio Surgery Heating-Cooling Units and from Clinical Samples in Israel Are Genetically Unrelated.	Rubinstein M, Grossman R, Nissan I, Schwaber MJ, Carmeli Y, Kaidar-Shwartz H, Dveyrin Z, Rorman E.	Pathogens	10.3390/pathogens10111392	2021
Genetics	High diversity of clinical Mycobacterium intracellulare in China revealed by whole genome sequencing.	Song Z, Liu Z, Ma A, Liu C, He W, Zeng X, Wang Y, He P, Liu D, Zhao B, Xia H, Wang S, Zhao Y.	Front Public Health	10.3389/fpubh.2022.989587	2022
	Drug susceptibility distributions of Mycobacterium chimaera and other non-tuberculous mycobacteria.	Schulthess B, Schafle D, Kalin N, Widmer T, Sander P.	Antimicrob Agents Chemother	10.1128/aac.02131-20	2023
	Characterization of Biofilm Formation by Mycobacterium chimaera on Medical Device Materials.	Siddam AD, Zaslow SJ, Wang Y, Phillips KS, Silverman MD, Regan PM, Amarasinghe JJ.	Front Microbiol	10.3389/fmicb.2020.586657	2020
	Evaluation of a Novel MALDI Biotyper Algorithm to Distinguish Mycobacterium intracellulare From Mycobacterium chimaera.	Epperson LE, Timke M, Hasan NA, Godo P, Durbin D, Helstrom NK, Shi G, Kostrzewa M, Strong M, Salfinger M.	Front Microbiol	10.3389/fmicb.2018.03140	2018
Genetics	Clinical and genomic features of Mycobacterium avium complex: a multi-national European study.	Wetzstein N, Diricks M, Anton TB, Andres S, Kuhns M, Kohl TA, Schwarz C, Lewin A, Kehrmann J, Kahl BC, Schmidt A, Zimmermann S, Jansson MK, Baron SA, Schulthess B, Hogardt M, Friesen I, Niemann S, Wichelhaus TA.	Genome Med	10.1186/s13073-024-01359-8	2024
	Clinical Evaluation of Nontuberculous Mycobacteria (NTM) Elite Agar, a New Medium for the Isolation of NTM: a Multicenter Study.	Broncano-Lavado A, Barrado L, Lopez-Roa P, Cacho J, Domingo D, Hernandez S, Garcia-Martinez J, Millan MR, Perez-Cecilia E, Ruiz-Serrano MJ, Salso S, Simon M, Tato M, Toro C, Valverde-Canovas JF, Esteban J.	J Clin Microbiol	10.1128/jcm.00036-23	2023
Phylogeny	Evaluation of GenoType NTM-DR Assay for Identification of Mycobacterium chimaera.	Mok S, Rogers TR, Fitzgibbon M.	J Clin Microbiol	10.1128/jcm.00009-17	2017
	Is there a role for tedizolid in the treatment of non-tuberculous mycobacterial disease?	Ruth MM, Koeken VACM, Pennings LJ, Svensson EM, Wertheim HFL, Hoefsloot W, van Ingen J.	J Antimicrob Chemother	10.1093/jac/dkz511	2020
Pathogenicity	Antimicrobial Susceptibility of Clinical and Environmental Mycobacterium chimaera Isolates.	Mok S, Hannan MM, Nolke L, Stapleton P, O'Sullivan N, Murphy P, McLaughlin AM, McNamara E, Fitzgibbon MM, Rogers TR.	Antimicrob Agents Chemother	10.1128/aac.00755-19	2019
Enzymology	Insidious Risk of Severe Mycobacterium chimaera Infection in Cardiac Surgery Patients.	Chand M, Lamagni T, Kranzer K, Hedge J, Moore G, Parks S, Collins S, Del Ojo Elias C, Ahmed N, Brown T, Smith EG, Hoffman P, Kirwan P, Mason B, Smith-Palmer A, Veal P, Lalor MK, Bennett A, Walker J, Yeap A, Isidro Carrion Martin A, Dolan G, Bhatt S, Skingsley A, Charlett A, Pearce D, Russell K, Kendall S, Klein AA, Robins S, Schelenz S, Newsholme W, Thomas S, Collyns T, Davies E, McMenamin J, Doherty L, Peto TE, Crook D, Zambon M, Phin N.	Clin Infect Dis	10.1093/cid/ciw754	2017
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Enzymology	Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.	Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ, Chan ED, Falkinham JO, Strong M.	PLoS Negl Trop Dis	10.1371/journal.pntd.0005068	2016
Phylogeny	Identification of Mycobacterium chimaera in heater-cooler units in China.	Zhang X, Lin J, Feng Y, Wang X, McNally A, Zong Z	Sci Rep	10.1038/s41598-018-26289-5	2018
Genetics	Genome sequence of Mycobacterium yongonense RT 955-2015 isolate from a patient misdiagnosed with multidrug-resistant tuberculosis: First clinical detection in Tanzania.	Mnyambwa NP, Kim DJ, Ngadaya E, Chun J, Ha SM, Petrucka P, Addo KK, Kazwala RR, Mfinanga SG	Int J Infect Dis	10.1016/j.ijid.2018.04.796	2018
Phylogeny	Mycobacterium yongonense sp. nov., a slow-growing non-chromogenic species closely related to Mycobacterium intracellulare.	Kim BJ, Math RK, Jeon CO, Yu HK, Park YG, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.037465-0	2012
Phylogeny	Mycobacterium mantenii sp. nov., a pathogenic, slowly growing, scotochromogenic species.	van Ingen J, Lindeboom JA, Hartwig NG, de Zwaan R, Tortoli E, Dekhuijzen PN, Boeree MJ, van Soolingen D	Int J Syst Evol Microbiol	10.1099/ijs.0.010405-0	2009
Phylogeny	Proposal to elevate the genetic variant MAC-A, included in the Mycobacterium avium complex, to species rank as Mycobacterium chimaera sp. nov.	Tortoli E, Rindi L, Garcia MJ, Chiaradonna P, Dei R, Garzelli C, Kroppenstedt RM, Lari N, Mattei R, Mariottini A, Mazzarelli G, Murcia MI, Nanetti A, Piccoli P, Scarparo C	Int J Syst Evol Microbiol	10.1099/ijs.0.02777-0	2004

References

#11935	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44623
#20080	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26345	IJSEM 1277 2004 ( DOI 10.1099/ijs.0.02777-0 , PubMed 15280303 )
#29977	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26345
#36332	; Curators of the CIP;
#59077	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50989
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118232	Collection of Institut Pasteur ; Curators of the CIP; CIP 107892
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium intracellulare subsp. chimaera (DSM 44623, CIP 107892, CCUG 50989)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002219285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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