Mycobacterium canariasense (JCM 15298, DSM 44828, CCUG 47953)

Name: Mycobacterium canariasense (JCM 15298, DSM 44828, CCUG 47953)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8529

Type strain

Strain Designation 502329

Culture col. no. JCM 15298 DSM 44828 CCUG 47953 CIP 107998 502329

NCBI tax ID(s) 228230

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- CIP <- M.S. Jiménez, Madrid; 502329 CIP <- 2003, M.S. Jiménez, Madrid, Spain: strain 502329 JCM <-- CCUG 47953 <-- CIP 107998 <-- M. Soledad Jiménez 502329. CIP <- 2003, M.S. Jiménez, Madrid, Spain: strain 502329

Links

Mycobacterium canariasense 502329 is a microaerophile, rod-shaped bacterium that was isolated from human blood.

rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134299

CT2025-00087,CCUG 47953,CIP 107998,DSM 44828,CIP 107998.502329,JCM 15298

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium canariasense

Full scientific name Mycobacterium canariasense Jiménez et al. 2004

Synonyms (1)

Mycolicibacterium canariasense

Morphology

Cell morphology

@ref	Cell shape	Confidence	Gram stain
30150	rod-shaped
117129	rod-shaped
125439		92.942
125439		93.497	positive

Colony morphology

57934

Incubation period2-3 days

Pigmentation

30150

Productionno

Multimedia

@ref:	12010
multimedia content:	DSM_44828.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44828.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12010	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
38251	MEDIUM 55 - for Mycobacterium
117129	CIP Medium 55	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
12010	positive	growth	37
30150	positive	growth	30-37
38251	positive	growth	30
57934	positive	growth	30-37
67770	positive	growth	37
117129	positive	growth	22-30
117129	negative	growth	10
117129	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57934	microaerophile
117129	obligate aerobe
125439	obligate aerobe	98.346

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30150	22599 ChEBI	arabinose	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
117129	606565 ChEBI	hippurate	-	hydrolysis
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30150	29864 ChEBI	mannitol	+	carbon source
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
117129	17632 ChEBI	nitrate	-	reduction
117129	17632 ChEBI	nitrate	-	respiration
117129	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
30150	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117129	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117129	amylase	-
30150	arylsulfatase	+	3.1.6.1
68382	beta-galactosidase	-	3.2.1.23	from API zym
117129	beta-galactosidase	-	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
117129	caseinase	-	3.4.21.50
30150	catalase	+	1.11.1.6
117129	catalase	+	1.11.1.6
68379	catalase	-	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
117129	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
117129	gamma-glutamyltransferase	+	2.3.2.2
117129	gelatinase	-
68379	gelatinase	-		from API Coryne
117129	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
117129	lipase	-
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117129	oxidase	-
117129	protease	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
117129	tween esterase	+
117129	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
57934	-	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
57934	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	+	-	-	-
117129	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
117129	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	+	-	-	-	+	-	-	-	-	+	-	+	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	+	+	-	-	-	+	-	+	-	+	-	-	-	-	-	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
12010	human blood	Homo sapiens			Spain	ESP	Europe
57934	Human blood	Homo sapiens	2002-01-01	Las Palmas,Hospital Dr. Negrin	Spain	ESP	Europe
67770	Blood of a patient with febrile syndrome	Homo sapiens		Canary Islands	Spain	ESP	Europe
117129	Human, Blood	Homo sapiens			Spain	ESP	Europe	2002

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12010	2	Risk group (German classification) According to TRBA 466
117129	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2582234v1 assembly for Mycolicibacterium canariasense DSM 44828	scaffold	GCA_025822345	228230.16	8115284999	228230	63.71
67770	ASM210155v1 assembly for Mycolicibacterium canariasense CCUG 47953	contig	GCA_002101555	228230.4	8111148655	228230	55.76
67770	ASM157044v1 assembly for Mycolicibacterium canariasense JCM15298	scaffold	GCA_001570445	228230.3	2724679285	228230	49.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Mycobacterium canariasense strain CIP 107998 16S ribosomal RNA gene, partial sequence	AY943207	513		228230
30150	Mycobacterium canariasense 16S ribosomal RNA gene, partial sequence	AY255478	1433		228230

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2582234v1 assembly for Mycolicibacterium canariasense DSM 44828
NCBI: GCA_025822345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.35	no
125439	gram_stain	BacteriaNetⓘ	positive	93.50	no
125439	motility	BacteriaNetⓘ	no	92.94	no
125439	spore_formation	BacteriaNetⓘ	yes	53.83	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium canariasense strain CCUG 47953
PATRIC: 228230.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.41	no
125438	anaerobic	anaerobicⓘ	no	98.41	yes
125438	spore-forming	spore-formingⓘ	no	61.33	no
125438	aerobic	aerobicⓘ	yes	89.65	no
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	First report of isolation of Mycobacterium canariasense from hospital water supplies.	Azadi D, Dibaj R, Pourchangiz M, Daei-Naser A, Shojaei H.	Scand J Infect Dis	10.3109/00365548.2014.951683	2014
Phylogeny	Mycobacterium canariasense sp. nov.	Jimenez MS, Campos-Herrero MI, Garcia D, Luquin M, Herrera L, Garcia MJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02999-0	2004

References

#12010	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44828
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26501	IJSEM 1729 2004 ( DOI 10.1099/ijs.0.02999-0 , PubMed 15388736 )
#30150	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26501
#38251	; Curators of the CIP;
#57934	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47953
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#117129	Collection of Institut Pasteur ; Curators of the CIP; CIP 107998
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium canariasense (JCM 15298, DSM 44828, CCUG 47953)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

API coryne

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025822345

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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