Mycobacterium asiaticum 3056 is an obligate aerobe, rod-shaped human pathogen that was isolated from Rhesus monkey .
rod-shaped obligate aerobe human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium asiaticum |
| Full scientific name Mycobacterium asiaticum Weiszfeiler et al. 1971 (Approved Lists 1980) |
| BacDive ID | Other strains from Mycobacterium asiaticum (1) | Type strain |
|---|---|---|
| 8430 | M. asiaticum Runyon 3016, N27A, DSM 44292, ATCC 25274, ... |
| @ref: | 11654 |
| multimedia content: | DSM_44297.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_44297.jpg |
| caption: | Medium 645 37°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11654 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | Medium recipe at MediaDive | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water | ||
| 36335 | MEDIUM 55 - for Mycobacterium | ||||
| 116527 | CIP Medium 55 | Medium recipe at CIP |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116527 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116527 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 116527 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 116527 | gelatinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 116527 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116527 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | ethylmalonyl-CoA pathway | 100 | 5 of 5 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | octane oxidation | 100 | 3 of 3 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | lactate fermentation | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | propionate fermentation | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | propanol degradation | 85.71 | 6 of 7 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | vitamin B12 metabolism | 82.35 | 28 of 34 | ||
| 66794 | glutamate and glutamine metabolism | 82.14 | 23 of 28 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | urea cycle | 76.92 | 10 of 13 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | ||
| 66794 | toluene degradation | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | purine metabolism | 72.34 | 68 of 94 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | lipid metabolism | 70.97 | 22 of 31 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | 3-phenylpropionate degradation | 66.67 | 10 of 15 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | methionine metabolism | 65.38 | 17 of 26 | ||
| 66794 | isoprenoid biosynthesis | 65.38 | 17 of 26 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 64.71 | 11 of 17 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | androgen and estrogen metabolism | 62.5 | 10 of 16 | ||
| 66794 | pyrimidine metabolism | 62.22 | 28 of 45 | ||
| 66794 | oxidative phosphorylation | 61.54 | 56 of 91 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | phenol degradation | 60 | 12 of 20 | ||
| 66794 | 3-chlorocatechol degradation | 60 | 3 of 5 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 60 | 9 of 15 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | cholesterol biosynthesis | 54.55 | 6 of 11 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | arginine metabolism | 54.17 | 13 of 24 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | degradation of pentoses | 50 | 14 of 28 | ||
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | sphingosine metabolism | 50 | 3 of 6 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | ascorbate metabolism | 50 | 11 of 22 | ||
| 66794 | resorcinol degradation | 50 | 1 of 2 | ||
| 66794 | degradation of sugar acids | 48 | 12 of 25 | ||
| 66794 | lysine metabolism | 47.62 | 20 of 42 | ||
| 66794 | degradation of hexoses | 44.44 | 8 of 18 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | polyamine pathway | 43.48 | 10 of 23 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | creatinine degradation | 40 | 2 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | elloramycin biosynthesis | 40 | 2 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | chlorophyll metabolism | 33.33 | 6 of 18 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | phenylpropanoid biosynthesis | 30.77 | 4 of 13 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | d-xylose degradation | 27.27 | 3 of 11 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 | ||
| 66794 | daunorubicin biosynthesis | 22.22 | 2 of 9 |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 49503 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | PRJEB5743_assembly_1 assembly for Mycobacterium asiaticum DSM 44297 | scaffold | 1265310 | 56.52 | ||||
| 66792 | ASM208654v1 assembly for Mycobacterium asiaticum DSM 44297 | contig | 1265310 | 51.01 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Mycobacterium asiaticum 16S ribosomal RNA gene, partial sequence | AF480595 | 1466 | 1790 | ||
| 20218 | M.asiaticum 16S ribosomal RNA | M29556 | 1368 | 1790 | ||
| 20218 | M.asiaticum 16S ribosomal RNA, part | X55604 | 1468 | 1790 | ||
| 20218 | Mycobacterium asiaticum strain DSM 44297 16S ribosomal RNA gene, partial sequence | AF547896 | 554 | 1265310 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.63 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 87.71 | no |
| 125439 | motility | BacteriaNetⓘ | no | 87.53 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 47.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.05 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.18 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 84.13 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 61.81 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 87.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Draft Genome Sequence of Mycobacterium bohemicum Strain DSM 44277T. | Asmar S, Phelippeau M, Robert C, Croce O, Drancourt M. | Genome Announc | 10.1128/genomea.00878-15 | 2015 | ||
| Chemotaxonomy and Antibacterial Activity of the Extracts and Chemical Constituents of Psychotria succulenta Hiern. (Rubiaceae). | Ngnokam Jouogo DC, Tamokou JD, Teponno RB, Matsuete-Takongmo G, Voutquenne-Nazabadioko L, Tapondjou LA, Ngnokam D. | Biomed Res Int | 10.1155/2022/7856305 | 2022 | ||
| Enzymology | Evaluation of the invader assay with the BACTEC MGIT 960 system for prompt isolation and identification of mycobacterial species from clinical specimens. | Ichimura S, Nagano M, Ito N, Shimojima M, Egashira T, Miyamoto C, Ohkusu K, Ezaki T. | J Clin Microbiol | 10.1128/jcm.02289-06 | 2007 | |
| Enzymology | Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. | Davenport RJ, Curtis TP, Goodfellow M, Stainsby FM, Bingley M. | Appl Environ Microbiol | 10.1128/aem.66.3.1158-1166.2000 | 2000 | |
| Nosiheptide Harbors Potent In Vitro and Intracellular Inhbitory Activities against Mycobacterium tuberculosis. | Yu X, Zhu R, Geng Z, Kong Y, Wang F, Dong L, Zhao L, Xue Y, Ma X, Huang H. | Microbiol Spectr | 10.1128/spectrum.01444-22 | 2022 | ||
| In Vitro Activity of the Sudapyridine (WX-081) against Non-Tuberculous Mycobacteria Isolated in Beijing, China. | Zhu R, Shang Y, Chen S, Xiao H, Ren R, Wang F, Xue Y, Li L, Li Y, Chu N, Huang H. | Microbiol Spectr | 10.1128/spectrum.01372-22 | 2022 | ||
| In vitro Antimicrobial Activity Comparison of Linezolid, Tedizolid, Sutezolid and Delpazolid Against Slowly Growing Mycobacteria Isolated in Beijing, China. | Yu X, Huo F, Wang F, Wen S, Jiang G, Xue Y, Dong L, Zhao L, Zhu R, Huang H. | Infect Drug Resist | 10.2147/idr.s332835 | 2021 | ||
| Pathogenicity | In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China. | Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H. | Antimicrob Agents Chemother | 10.1128/aac.00031-19 | 2019 | |
| Influence of plant diversity and elevated atmospheric carbon dioxide levels on belowground bacterial diversity. | Gruter D, Schmid B, Brandl H. | BMC Microbiol | 10.1186/1471-2180-6-68 | 2006 | ||
| Phylogeny | Rapid identification of mycobacterial whole cells in solid and liquid culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry. | Lotz A, Ferroni A, Beretti JL, Dauphin B, Carbonnelle E, Guet-Revillet H, Veziris N, Heym B, Jarlier V, Gaillard JL, Pierre-Audigier C, Frapy E, Berche P, Nassif X, Bille E. | J Clin Microbiol | 10.1128/jcm.01397-10 | 2010 | |
| Phylogeny | Biochip system for rapid and accurate identification of mycobacterial species from isolates and sputum. | Zhu L, Jiang G, Wang S, Wang C, Li Q, Yu H, Zhou Y, Zhao B, Huang H, Xing W, Mitchelson K, Cheng J, Zhao Y, Guo Y. | J Clin Microbiol | 10.1128/jcm.00158-10 | 2010 | |
| Pathogenicity | Dual-probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR. | Wada T, Maeda S, Tamaru A, Imai S, Hase A, Kobayashi K. | J Clin Microbiol | 10.1128/jcm.42.11.5277-5285.2004 | 2004 | |
| Phylogeny | Routine identification of Mycobacterium tuberculosis complex isolates by automated hybridization. | Mabilat C, Desvarenne S, Panteix G, Machabert N, Bernillon MH, Guardiola G, Cros P. | J Clin Microbiol | 10.1128/jcm.32.11.2702-2705.1994 | 1994 | |
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Phylogeny | The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria. | Stahl DA, Urbance JW. | J Bacteriol | 10.1128/jb.172.1.116-124.1990 | 1990 | |
| Identification of mycobacteria by high-performance liquid chromatography. | Butler WR, Jost KC, Kilburn JO. | J Clin Microbiol | 10.1128/jcm.29.11.2468-2472.1991 | 1991 | ||
| Genetics | Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297. | Croce O, Robert C, Raoult D, Drancourt M | Genome Announc | 10.1128/genomeA.00320-14 | 2014 |
| #11654 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44297 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #36335 | ; Curators of the CIP; |
| #49503 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29115 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68382 | Automatically annotated from API zym . |
| #116527 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106809 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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