Strain identifier

BacDive ID: 8431

Type strain: Yes

Species: Mycobacterium asiaticum

Strain Designation: 3056, N61H, 61, 92003

Strain history: CIP <- 2000, JCM <- M. Tsukamura: strain 92003 <- H. Saito <- J. Weiszfeiler: strain 61

NCBI tax ID(s): 1265310 (strain), 1790 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11654

BacDive-ID: 8431

DSM-Number: 44297

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, human pathogen

description: Mycobacterium asiaticum 3056 is an obligate aerobe, mesophilic human pathogen that was isolated from indian monkey.

NCBI tax id

NCBI tax idMatching level
1790species
1265310strain

strain history

@refhistory
11654<- CCUG <- M. Ridell, Univ. Göteborg <- A. Lind <- ATCC <- E.H. Runyon, 3056 <- J. Weiszfeiler, N61H
116527CIP <- 2000, JCM <- M. Tsukamura: strain 92003 <- H. Saito <- J. Weiszfeiler: strain 61

doi: 10.13145/bacdive8431.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium asiaticum
  • full scientific name: Mycobacterium asiaticum Weiszfeiler et al. 1971 (Approved Lists 1980)

@ref: 11654

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium asiaticum

full scientific name: Mycobacterium asiaticum Weiszfeiler et al. 1971 emend. Nouioui et al. 2018

strain designation: 3056, N61H, 61, 92003

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.507
69480100positive
116527norod-shaped

multimedia

  • @ref: 11654
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44297.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11654MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
36335MEDIUM 55 - for Mycobacteriumyes
116527CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
11654positivegrowth37mesophilic
36335positivegrowth37mesophilic
116527positivegrowth22-37
116527nogrowth10psychrophilic
116527nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116527
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.831

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
116527606565hippurate-hydrolysis
11652717632nitrate+reduction
11652716301nitrite-reduction
11652717632nitrate-respiration

metabolite production

  • @ref: 116527
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116527oxidase-
116527beta-galactosidase-3.2.1.23
116527gelatinase-
116527catalase+1.11.1.6
116527gamma-glutamyltransferase-2.3.2.2
116527urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49503C14:05.214
    49503C15:00.715
    49503C16:034.816
    49503C17:00.517
    49503C18:03.318
    49503C14:0 ANTEISO0.313.707
    49503C16:0 anteiso0.815.717
    49503C16:0 iso1.215.626
    49503C16:1 ω11c0.815.757
    49503C16:1 ω7c0.815.819
    49503C16:1 ω7c/C15:0 ISO 2OH0.915.85
    49503C17:0 anteiso0.516.722
    49503C17:1 ω5c ISO1.216.461
    49503C17:1 ω8c0.416.792
    49503C18:1 ω9c16.217.769
    49503C18:2 ω6,9c/C18:0 ANTE30.617.724
    49503C20:4 ω6,9,12,15c0.219.395
    49503Unidentified0.511.052
    49503Unidentified0.511.959
    49503Unidentified0.216.101
    49503Unidentified0.217.191
    49503Unidentified0.218.181
    49503Unidentified0.318.459
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116527--------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116527---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic location
11654indian monkeyMacaca mulatta
49503Indian monkey,Macaca mulatta
116527Indian monkey, Macacus rhesus

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Primates

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
11654yesyes2Risk group (German classification)
1165271Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium asiaticum 16S ribosomal RNA gene, partial sequenceAF4805951466ena1790
20218M.asiaticum 16S ribosomal RNAM295561368ena1790
20218M.asiaticum 16S ribosomal RNA, partX556041468ena1790
20218Mycobacterium asiaticum strain DSM 44297 16S ribosomal RNA gene, partial sequenceAF547896554ena1265310

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium asiaticum DSM 44297GCA_000613245scaffoldncbi1265310
66792Mycobacterium asiaticum DSM 44297GCA_002086545contigncbi1265310
66792Mycobacterium asiaticum DSM 442971265310.3wgspatric1265310
66792Mycobacterium asiaticum DSM 44297 strain DSM 442971265310.4wgspatric1265310
66792Mycobacterium asiaticum 30562619619251draftimg1265310

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno89no
motileno94.651no
flagellatedno98.949no
gram-positiveyes89.842no
anaerobicno99.167no
halophileno94.541no
spore-formingno82.858no
thermophileno99.329yes
glucose-utilyes67.494no
aerobicyes93.551no
glucose-fermentno91.676no

External links

@ref: 11654

culture collection no.: DSM 44297, ATCC 25276, CCUG 29115, TMC 803, CIP 106809, JCM 6409

straininfo link

  • @ref: 77830
  • straininfo: 45745

literature

  • topic: Genetics
  • Pubmed-ID: 24744338
  • title: Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297.
  • authors: Croce O, Robert C, Raoult D, Drancourt M
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00320-14
  • year: 2014

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11654Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44297)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44297
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36335Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18981
49503Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 29115)https://www.ccug.se/strain?id=29115
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77830Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45745.1StrainInfo: A central database for resolving microbial strain identifiers
116527Curators of the CIPCollection of Institut Pasteur (CIP 106809)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106809