Name: Mycobacterium gilvum Spyr1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8401

Type strain:

Species: Mycobacterium gilvum

Strain Designation: Spyr1

Culture col. no.: DSM 45189, LMG 24558

Strain history: <- A. Kallimanis, Univ. Ioannina, Dept. Of Chemistry; Spyr1

NCBI tax ID(s): 1804 (species)

SI-ID 402964

DSM 45189

Special Collections

DSMZ

Other strains from Mycobacterium gilvum

Section

Mycobacterium gilvum Spyr1 is a bacterium that was isolated from soil from a creosote contaminated site.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium gilvum**
	Full Scientific Name (LPSN)	Mycobacterium gilvum Stanford and Gunthorpe 1971 (Approved Lists 1980)

Synonym

Mycolicibacterium gilvum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.069

Multimedia content

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Caption:

Medium 250 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15648]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15648]	Sample type/isolated from	soil from a creosote contaminated site
[Ref.: #15648]	Geographic location (country and/or sea, region)	Ioannina NW
[Ref.: #15648]	Country	Greece
[Ref.: #15648]	Country ISO 3 Code	GRC
[Ref.: #15648]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15648]	Mycobacterium gilvum Spyr1 16S rRNA gene, strain Spyr1	AJ699170	1283	GenBank ENA	278137 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium gilvum Spyr1	278137.19	plasmid	PATRIC	278137 tax ID	*
[Ref.: #66792]	Mycobacterium gilvum Spyr1	278137.18	plasmid	PATRIC	278137 tax ID	*
[Ref.: #66792]	Mycobacterium gilvum Spyr1	278137.3	complete	PATRIC	278137 tax ID	*

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GC-content

67 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium gilvum Spyr1 PATRIC: 278137.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.069	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.587	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	56.778	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.333	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

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Culture collection no.

DSM 45189, LMG 24558

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SI-ID 402964

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.	Kallimanis A, Karabika E, Mavromatis K, Lapidus A, Labutti KM, Liolios K, Ivanova N, Goodwin L, Woyke T, Velentzas AD, Perisynakis A, Ouzounis CC, Kyrpides NC, Koukkou AI, Drainas C	Stand Genomic Sci	10.4056/sigs.2265047	2011	*

References

#15648

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45189

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77800

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402964.1 )

* These data were automatically processed and therefore are not curated

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