Mycobacterium marinum (DSM 43518, SN 1254, Simon)

Name: Mycobacterium marinum (DSM 43518, SN 1254, Simon)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8270

Type strain

Strain Designation Simon

Culture col. no. DSM 43518 SN 1254 Simon

NCBI tax ID(s) 1781

Special Collections DSMZ

History <- I. Tarnok, SN 1254 <- G. Meissner, 438 <- Simon, Universitätsklinik Kiel

Links

Mycobacterium marinum Simon is a bacterium of the family Mycobacteriaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 50318

DSM 43518

@ref 20215

Last LPSN update 2026-02-09 11:19:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium marinum

Full scientific name Mycobacterium marinum Aronson 1926 (Approved Lists 1980)

BacDive ID	Other strains from **Mycobacterium marinum** (11)	Type strain
8273	M. marinum 140120001, DSM 44344, ATCC 927, NCIMB 1297, ... (type strain)
8271	M. marinum Lausanne 1848, DSM 43519, SN 1256
8272	M. marinum DSM 43824, SN 1255
8274	M. marinum V, DSM 44345, ATCC 11567, NCIMB 1482, NCTC ...
8275	M. marinum DSM 44750, ATCC 11564
136783	M. marinum CIP 64.23
141273	M. marinum CCUG 533
146843	M. marinum CCUG 32219
146844	M. marinum CCUG 32220
146845	M. marinum CCUG 32221
152909	M. marinum CCUG 47951

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	96
125439		96.2
125438		90.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11106	LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)	Medium recipe at MediaDive	Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
11106	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11106	PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251)	Medium recipe at MediaDive	Name: PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) Composition: Glycerol 20.0 g/l Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Soil extract Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11106	positive	growth	28
11106	positive	growth	22-28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.7

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11106	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM343156v1 assembly for Mycobacterium marinum DSM 43518	scaffold	GCA_003431565	1781.43	8043228025	1781	37.69

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium marinum DSM 43518
NCBI: GCA_003431565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	56.10	no
125439	motility	BacteriaNetⓘ	no	96.20	no
125439	gram_stain	BacteriaNetⓘ	positive	96.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium marinum DSM 43518
NCBI: GCA_003431565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.46	no
125438	anaerobic	anaerobicⓘ	no	97.79	no
125438	aerobic	aerobicⓘ	yes	80.75	no
125438	spore-forming	spore-formingⓘ	no	65.09	no
125438	thermophilic	thermophileⓘ	no	94.90	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

References

#11106	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43518
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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