Strain identifier
BacDive ID: 8270
Type strain: 
Species: Mycobacterium marinum
Strain Designation: Simon
Strain history: <- I. Tarnok, SN 1254 <- G. Meissner, 438 <- Simon, Universitätsklinik Kiel
NCBI tax ID(s): 1781 (species)
version 9.1 (current version)
General
@ref: 11106
BacDive-ID: 8270
DSM-Number: 43518
keywords: genome sequence, Bacteria
description: Mycobacterium marinum Simon is a bacterium of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 1781
- Matching level: species
strain history
- @ref: 11106
- history: <- I. Tarnok, SN 1254 <- G. Meissner, 438 <- Simon, Universitätsklinik Kiel
doi: 10.13145/bacdive8270.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium marinum
- full scientific name: Mycobacterium marinum Aronson 1926 (Approved Lists 1980)
@ref: 11106
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium marinum
full scientific name: Mycobacterium marinum Aronson 1926
strain designation: Simon
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 90.5
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11106 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
| 11106 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 11106 | PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) | yes | https://mediadive.dsmz.de/medium/251 | Name: PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) Composition: Glycerol 20.0 g/l Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Soil extract Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 11106 | positive | growth | 28 |
| 11106 | positive | growth | 22-28 |
Safety information
risk assessment
- @ref: 11106
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium marinum DSM 43518 | GCA_003431565 | scaffold | ncbi | 1781 |
| 66792 | Mycobacterium marinum strain DSM 43518 | 1781.43 | wgs | patric | 1781 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 71 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.459 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.789 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.748 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 65.086 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.9 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 11106
culture collection no.: DSM 43518, SN 1254
straininfo link
- @ref: 77672
- straininfo: 50318
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11106 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43518) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43518 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 77672 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50318.1 | StrainInfo: A central database for resolving microbial strain identifiers |