Mycobacterium marinum (DSM 43519, SN 1256, Lausanne 1848)

Name: Mycobacterium marinum (DSM 43519, SN 1256, Lausanne 1848)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8271

Type strain

Strain Designation Lausanne 1848

Culture col. no. DSM 43519 SN 1256 Lausanne 1848

NCBI tax ID(s) 1781

Special Collections DSMZ

History <- I. Tarnok, SN 1256 <- P. Hauduroy, Lausanne, 1848 original Aronson 1926

Links

Mycobacterium marinum Lausanne 1848 is a bacterium of the family Mycobacteriaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 50319

DSM 43519

@ref 20215

Last LPSN update 2026-02-09 11:19:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium marinum

Full scientific name Mycobacterium marinum Aronson 1926 (Approved Lists 1980)

BacDive ID	Other strains from **Mycobacterium marinum** (11)	Type strain
8273	M. marinum 140120001, DSM 44344, ATCC 927, NCIMB 1297, ... (type strain)
8270	M. marinum Simon, DSM 43518, SN 1254
8272	M. marinum DSM 43824, SN 1255
8274	M. marinum V, DSM 44345, ATCC 11567, NCIMB 1482, NCTC ...
8275	M. marinum DSM 44750, ATCC 11564
136783	M. marinum CIP 64.23
141273	M. marinum CCUG 533
146843	M. marinum CCUG 32219
146844	M. marinum CCUG 32220
146845	M. marinum CCUG 32221
152909	M. marinum CCUG 47951

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.5
125439	96.8	positive
125439	96.3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11107	LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)	Medium recipe at MediaDive	Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
11107	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11107	PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251)	Medium recipe at MediaDive	Name: PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) Composition: Glycerol 20.0 g/l Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Soil extract Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11107	positive	growth	22-28

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11107	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM343160v1 assembly for Mycobacterium marinum DSM 43519	scaffold	GCA_003431605	1781.46	8043216529	1781	35.35

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium marinum DSM 43519
NCBI: GCA_003431605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.00	no
125439	motility	BacteriaNetⓘ	no	96.30	no
125439	gram_stain	BacteriaNetⓘ	positive	96.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	88.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium marinum DSM 43519
NCBI: GCA_003431605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.46	no
125438	anaerobic	anaerobicⓘ	no	98.16	no
125438	aerobic	aerobicⓘ	yes	80.26	no
125438	spore-forming	spore-formingⓘ	no	63.80	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

References

#11107	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43519
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us