Name: Mycobacterium farcinogenes GA 923 N168
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8232

Type strain:

Species: Mycobacterium farcinogenes

Strain Designation: GA 923 N168, M 262

Culture col. no.: DSM 43637, ATCC 35753, CCM 6181, NCTC 10955, CCUG 21047, JCM 15463, TMC 805

Strain history: NCTC 10955 <-- P. Perreau <-- G. Chamoiseau 75.

NCBI tax ID(s): 1237860 (strain), 1802 (species)

SI-ID 41267

ATCC 35753, NCTC 10955, CCUG 21047, DSM 43637, CCM 6181, JCM 15463, CNCTC 7268

Other strains from Mycobacterium farcinogenes

Section

Mycobacterium farcinogenes GA 923 N168 is a microaerophile, mesophilic animal pathogen that was isolated from bovine farcy.

animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium farcinogenes**
	Full Scientific Name (LPSN)	Mycobacterium farcinogenes Chamoiseau 1973 (Approved Lists 1980)

Synonym

Mycolicibacterium farcinogenes

Information on morphological and physiological properties Morphology

[Ref.: #47262]

Incubation period

>5 days

Multimedia content

[Ref.: #11203]

Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11203]

Culture medium

LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11203]

Culture medium composition

expand / minimize

[Ref.: #11203]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #11203]

Culture medium growth

[Ref.: #11203]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11203]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11203]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #11203]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47262]

Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11203]	Sample type/isolated from	bovine farcy

[Ref.: #47262]	Sample type/isolated from	Bovine lymph node
[Ref.: #47262]	Sampling date	1963

[Ref.: #67770]	Sample type/isolated from	Bovine farcy lesion
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Infection	#Disease	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT718447 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	50
Plant Samples	337
Total Samples	496

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11203]	Pathogenicity (animal)	yes
[Ref.: #11203]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11203]	Mycobacterium farcinogenes partial 16S rRNA gene, strain DSM 43637	LT718447	1496	ENA	1802 tax ID
[Ref.: #20218]	Mycobacterium farcinogenes 16S ribosomal RNA gene, partial sequence	AF055333	1482	ENA	1802 tax ID	*
[Ref.: #20218]	Mycobacterium farcinogenes strain DSM 43637 16S ribosomal RNA gene, partial sequence	AF547921	540	ENA	1802 tax ID	*
[Ref.: #20218]	Mycobacterium farcinogenes strain NCTC 10955 16S ribosomal RNA gene, partial sequence	AY457084	1483	ENA	1802 tax ID	*
[Ref.: #20218]	Mycobacterium farcinogenes 16S rRNA gene, partial	Y11581	467	ENA	1802 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacterium farcinogenes DSM 43637	GCA_000723385	scaffold	GenBank	1802 tax ID
[Ref.: #66792]	Mycobacterium farcinogenes strain DSM 43637	1802.5	wgs	PATRIC	1802 tax ID	*
[Ref.: #66792]	Mycolicibacterium farcinogenes DSM 43637	2609460330	draft	JGI IMG/M	1802 tax ID	*
[Ref.: #66792]	Mycolicibacterium farcinogenes DSM 43637	GCA_025821245	scaffold	GenBank	1802 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium farcinogenes strain DSM 43637 PATRIC: 1802.5
[Ref.: #69480]	motile	no	93.325	no
[Ref.: #69480]	gram-positive	yes	89.648	no
[Ref.: #69480]	anaerobic	no	99.346	yes
[Ref.: #69480]	aerobic	yes	87.175	no
[Ref.: #69480]	halophile	no	93.778	no
[Ref.: #69480]	spore-forming	no	84.96	no
[Ref.: #69480]	glucose-util	yes	87.328	no
[Ref.: #69480]	flagellated	no	97.811	no
[Ref.: #69480]	thermophile	no	99.64	yes
[Ref.: #69480]	glucose-ferment	no	90.697	no

Availability in culture collections External links

[Ref.: #11203]

Culture collection no.

DSM 43637, ATCC 35753, CCM 6181, NCTC 10955, CCUG 21047, JCM 15463, TMC 805

[Ref.: #77634]

SI-ID 41267

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish.	Fogelson SB, Camus AC, Lorenz W, Phillips A, Bartlett P, Sanchez S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002978	2018	*
Genetics	Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955.	Croce O, Robert C, Raoult D, Drancourt M	Genome Announc	10.1128/genomeA.00523-14	2014	*

References

#11203

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43637

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#47262 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 21047

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77634

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41267.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium farcinogenes strain DSM 43637

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