Mycobacterium farcinogenes (DSM 43637, ATCC 35753, CCM 6181)

Name: Mycobacterium farcinogenes (DSM 43637, ATCC 35753, CCM 6181)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8232

Type strain

Strain Designation GA 923 N168, M 262, GA 923 (N168)

Culture col. no. DSM 43637 ATCC 35753 CCM 6181 NCTC 10955 CCUG 21047 8 more

NCBI tax ID(s) 1237860 1802

Special Collections DSMZ CCUG JCM JMRC

History DSMZ <- M. Ridell; GA 923 (N168) <- M. Goodfellow; M 262 <- M. P. Lechevalier; <- NCTC; NCTC 10955 JCM <-- NCTC 10955 <-- P. Perreau <-- G. Chamoiseau 75.

Links

Mycobacterium farcinogenes GA 923 N168 is a microaerophile animal pathogen that was isolated from bovine farcy.

microaerophile animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41267

ATCC 35753,NCTC 10955,CCUG 21047,DSM 43637,CCM 6181,JCM 15463,CNCTC 7268

@ref 20215

Last LPSN update 2026-05-29 08:26:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium farcinogenes

Full scientific name Mycobacterium farcinogenes Chamoiseau 1973 (Approved Lists 1980)

Synonyms (1)

Mycolicibacterium farcinogenes

BacDive ID	Other strains from **Mycobacterium farcinogenes** (32)	Type strain
8230	M. farcinogenes GA 921 N 166, M 260, DSM 43635, IP 736
8231	M. farcinogenes GA 922 N 167, M 261, DSM 43636, IP 740
8233	M. farcinogenes 1226, GA 948 N193, M 271, R 415, DSM 43638
8234	M. farcinogenes GA N195, M 276, R 428, DSM 43639, IP 743
8235	M. farcinogenes GA 951 N 196, M 277, R 429, DSM 43640, IP ...
8236	M. farcinogenes GA 959 N 204, M 269, R 422, DSM 43641, IP ...
8237	M. farcinogenes GA 967 N 212, M 273, R 414, DSM 43642, IP ...
8238	M. farcinogenes GA 968 N 213, N 275, R 427, DSM 43643, IP ...
8239	M. farcinogenes GA 969 N 214, M 280, MA 75, R 147 (Goodfellow ...
8240	M. farcinogenes 1223, GB 040 BF 1, N 709, DSM 43645
8241	M. farcinogenes 1242, GB 042 BF 3, N 711, DSM 43646
8242	M. farcinogenes 1224, GB 046 BF 7, N 715, DSM 43647
8243	M. farcinogenes 1243, GB 047 BF 8, N 716, DSM 43648
8244	M. farcinogenes 1244, GB 052 BF 13, N 720, DSM 43649
8293	M. farcinogenes 396/193, GA 786 (N 33), N696, DSM 43650
8301	M. farcinogenes D 2, GA 932 (N 177), M 283, R 456, DSM 43658
143059	M. farcinogenes CCUG 16729
143060	M. farcinogenes CCUG 16730
143061	M. farcinogenes CCUG 16731
143062	M. farcinogenes CCUG 16732
143063	M. farcinogenes CCUG 16733
143064	M. farcinogenes CCUG 16734
143065	M. farcinogenes CCUG 16736
143066	M. farcinogenes CCUG 16737
146363	M. farcinogenes CCUG 31038
146364	M. farcinogenes CCUG 31039
146369	M. farcinogenes CCUG 31044, ATCC 25970
146431	M. farcinogenes CCUG 31123
146432	M. farcinogenes CCUG 31124
149750	M. farcinogenes CCUG 38323
149751	M. farcinogenes CCUG 38324
149795	M. farcinogenes CCUG 38419

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	92.05

Colony morphology

47262

Incubation period>5 days

Multimedia

@ref:	11203
multimedia content:	DSM_43637.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43637.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11203	LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)		Medium recipe at MediaDive	Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
11203	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11203	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
47262	microaerophile
125439	facultative anaerobe	96.708

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Infection	#Disease	-

Isolation

@ref	Sample type	Sampling date
11203	bovine farcy
47262	Bovine lymph node	1963
67770	Bovine farcy lesion

Taxonmaps

69479

Global distribution of 16S sequence LT718447 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	50
Plant Samples	337
Total Samples	496

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
11203		2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	PRJEB5746_assembly_1 assembly for Mycolicibacterium farcinogenes DSM 43637	scaffold	GCA_000723385	1802.5	2609460330	1802	66.28
66792	ASM2582124v1 assembly for Mycolicibacterium farcinogenes DSM 43637	scaffold	GCA_025821245	1802.19	8114262004	1802	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Mycobacterium farcinogenes 16S ribosomal RNA gene, partial sequence	AF055333	1482	1802
20218	Mycobacterium farcinogenes strain DSM 43637 16S ribosomal RNA gene, partial sequence	AF547921	540	1802
20218	Mycolicibacterium farcinogenes strain NCTC 10955 16S ribosomal RNA gene, partial sequence	AY457084	1483	1802
20218	Mycobacterium farcinogenes 16S rRNA gene, partial	Y11581	467	1802
11203	Mycobacterium farcinogenes partial 16S rRNA gene, strain DSM 43637	LT718447	1496	1802

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: PRJEB5746_assembly_1 assembly for Mycolicibacterium farcinogenes DSM 43637
NCBI: GCA_000723385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.71	no
125439	gram_stain	BacteriaNetⓘ	positive	78.76	no
125439	motility	BacteriaNetⓘ	no	65.71	no
125439	spore_formation	BacteriaNetⓘ	no	70.43	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium farcinogenes strain DSM 43637
PATRIC: 1802.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.05	no
125438	anaerobic	anaerobicⓘ	no	98.12	yes
125438	spore-forming	spore-formingⓘ	no	60.76	no
125438	aerobic	aerobicⓘ	yes	85.99	yes
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	85.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Port-a-Cath Infection of Mycobacterium senegalense: First Italian Case Report.	Grassia G, Amisano F, Gaiarsa S, Bagnarino J, Compagno F, Panigari A, Baldanti F, Monzillo V, Barbarini D.	Microorganisms	10.3390/microorganisms12122431	2024
Phylogeny	Catheter-associated bacteremia by Mycobacterium senegalense in Korea.	Oh WS, Ko KS, Song JH, Lee MY, Ryu SY, Taek S, Kwon KT, Lee JH, Peck KR, Lee NY.	BMC Infect Dis	10.1186/1471-2334-5-107	2005
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Pathogenicity	In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China.	Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H.	Antimicrob Agents Chemother	10.1128/aac.00031-19	2019
Genetics	Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955.	Croce O, Robert C, Raoult D, Drancourt M	Genome Announc	10.1128/genomeA.00523-14	2014
Phylogeny	Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish.	Fogelson SB, Camus AC, Lorenz W, Phillips A, Bartlett P, Sanchez S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002978	2018

References

#11203	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43637
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#47262	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 21047
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium farcinogenes (DSM 43637, ATCC 35753, CCM 6181)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000723385

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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