Strain identifier
BacDive ID: 8232
Type strain: 
Species: Mycobacterium farcinogenes
Strain Designation: GA 923 N168, M 262
Strain history: NCTC 10955 <-- P. Perreau <-- G. Chamoiseau 75.
NCBI tax ID(s): 1237860 (strain), 1802 (species)
version 8.1 (current version)
General
@ref: 11203
BacDive-ID: 8232
DSM-Number: 43637
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen
description: Mycobacterium farcinogenes GA 923 N168 is a microaerophile, mesophilic animal pathogen that was isolated from bovine farcy.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1237860 | strain |
| 1802 | species |
strain history
| @ref | history |
|---|---|
| 11203 | <- M. Ridell, GA 923 (N168) <- M. Goodfellow, M 262 <- M.P. Lechevalier <- NCTC |
| 67770 | NCTC 10955 <-- P. Perreau <-- G. Chamoiseau 75. |
doi: 10.13145/bacdive8232.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium farcinogenes
- full scientific name: Mycobacterium farcinogenes Chamoiseau 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycolicibacterium farcinogenes
@ref: 11203
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium farcinogenes
full scientific name: Mycobacterium farcinogenes Chamoiseau 1973
strain designation: GA 923 N168, M 262
type strain: yes
Morphology
colony morphology
- @ref: 47262
- incubation period: >5 days
multimedia
- @ref: 11203
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43637.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11203 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
| 11203 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11203 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 47262
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date |
|---|---|---|
| 11203 | bovine farcy | |
| 47262 | Bovine lymph node | 1963 |
| 67770 | Bovine farcy lesion |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Infection | #Disease |
taxonmaps
- @ref: 69479
- File name: preview.99_515.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_115;97_219;98_419;99_515&stattab=map
- Last taxonomy: Mycolicibacterium
- 16S sequence: LT718447
- Sequence Identity:
- Total samples: 496
- soil counts: 45
- aquatic counts: 64
- animal counts: 50
- plant counts: 337
Safety information
risk assessment
- @ref: 11203
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycobacterium farcinogenes 16S ribosomal RNA gene, partial sequence | AF055333 | 1482 | ena | 1802 |
| 20218 | Mycobacterium farcinogenes strain DSM 43637 16S ribosomal RNA gene, partial sequence | AF547921 | 540 | ena | 1802 |
| 20218 | Mycobacterium farcinogenes strain NCTC 10955 16S ribosomal RNA gene, partial sequence | AY457084 | 1483 | ena | 1802 |
| 20218 | Mycobacterium farcinogenes 16S rRNA gene, partial | Y11581 | 467 | ena | 1802 |
| 11203 | Mycobacterium farcinogenes partial 16S rRNA gene, strain DSM 43637 | LT718447 | 1496 | ena | 1802 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium farcinogenes strain DSM 43637 | 1802.5 | wgs | patric | 1802 |
| 66792 | Mycolicibacterium farcinogenes DSM 43637 | 2609460330 | draft | img | 1802 |
| 67770 | Mycolicibacterium farcinogenes DSM 43637 | GCA_000723385 | scaffold | ncbi | 1802 |
| 66792 | Mycolicibacterium farcinogenes DSM 43637 | GCA_025821245 | scaffold | ncbi | 1802 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.325 | no |
| gram-positive | yes | 89.648 | no |
| anaerobic | no | 99.346 | yes |
| aerobic | yes | 87.175 | no |
| halophile | no | 93.778 | no |
| spore-forming | no | 84.96 | no |
| glucose-util | yes | 87.328 | no |
| flagellated | no | 97.811 | no |
| thermophile | no | 99.64 | yes |
| glucose-ferment | no | 90.697 | no |
External links
@ref: 11203
culture collection no.: DSM 43637, ATCC 35753, CCM 6181, NCTC 10955, CCUG 21047, JCM 15463, TMC 805
straininfo link
- @ref: 77634
- straininfo: 41267
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 24874688 | Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955. | Croce O, Robert C, Raoult D, Drancourt M | Genome Announc | 10.1128/genomeA.00523-14 | 2014 | ||
| Phylogeny | 30272539 | Mycobacterium syngnathidarum sp. nov., a rapidly growing mycobacterium identified in syngnathid fish. | Fogelson SB, Camus AC, Lorenz W, Phillips A, Bartlett P, Sanchez S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002978 | 2018 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Georgia, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology/*veterinary, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Smegmamorpha/*microbiology, South Carolina | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11203 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43637) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43637 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 47262 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 21047) | https://www.ccug.se/strain?id=21047 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 77634 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41267.1 | StrainInfo: A central database for resolving microbial strain identifiers |