Psychrobacter celer (DSM 23510, JCM 12601, KCTC 12313)

Name: Psychrobacter celer (DSM 23510, JCM 12601, KCTC 12313)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8207

Type strain

Strain Designation SW-238, JG-238

Culture col. no. DSM 23510 JCM 12601 KCTC 12313 SW-238 CIP 109014 1 more

NCBI tax ID(s) 306572

Special Collections DSMZ JCM KCTC CIP Literature strains

History <- KCTC <- J. H. Yoon, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea J.-H. Yoon SW-238. <- JH Yoon, KRIBB CIP <- 2005, JCM <- 2004, J.H. Yoon, KRIBB, Taejon, Korea: strain SW-238

Links

Psychrobacter celer SW-238 is an anaerobe, Gram-negative, ovoid-shaped bacterium that was isolated from sea water.

Gram-negative ovoid-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232816

KCTC 12313,JCM 12601,CIP 109014,DSM 23510

@ref 20215

Last LPSN update 2026-02-09 11:19:39

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter celer

Full scientific name Psychrobacter celer Yoon et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31493	negative	1.6 µm	1 µm	ovoid-shaped
67771	negative
117232	negative			coccus-shaped
125438	negative				99
125439	negative				95.1

Colony morphology

Pigmentation

31493

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17250	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
117232	CIP Medium 13		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17250	positive	growth	28
31493	positive	growth	04-40
31493	positive	optimum	32.5
67770	positive	growth	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31493	positive	optimum	7.5
31493	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31493	anaerobe
67771	aerobe
117232	obligate aerobe
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
31493
125438		94.185
125439		96.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31493	NaCl	positive	growth	0-16 %
31493	NaCl	positive	optimum	2.5 %

Observation

@ref	Observation
31493	aggregates in clumps
67770	quinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31493	30089 ChEBI	acetate	+	carbon source
31493	22599 ChEBI	arabinose	+	carbon source
31493	17234 ChEBI	glucose	+	carbon source
31493	17716 ChEBI	lactose	+	carbon source
31493	25115 ChEBI	malate	+	carbon source
31493	28053 ChEBI	melibiose	+	carbon source
117232	17632 ChEBI	nitrate	-	reduction
117232	16301 ChEBI	nitrite	-	reduction
31493	15361 ChEBI	pyruvate	+	carbon source
31493	26546 ChEBI	rhamnose	+	carbon source
31493	33942 ChEBI	ribose	+	carbon source
31493	30031 ChEBI	succinate	+	carbon source
31493	53423 ChEBI	tween 40	+	carbon source
31493	53426 ChEBI	tween 80	+	carbon source
31493	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117232	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
117232	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31493	catalase	+	1.11.1.6
117232	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31493	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
117232	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
117232	ornithine decarboxylase	-	4.1.1.17
117232	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
117232	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117232	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17250	sea water	South Sea	Republic of Korea	KOR	Asia
67770	Seawater		Republic of Korea	KOR	Asia
67771	From jeotgal		Republic of Korea	KOR	Asia
117232	Environment, Sea water	South Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY842259 (>99% sequence identity) for Psychrobacter celer from Microbeatlas

Aquatic Samples	90
Soil Samples	4
Animal Samples	134
Plant Samples	1
Total Samples	229

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17250	1	Risk group (German classification) According to TRBA 466
117232	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1610755v1 assembly for Psychrobacter celer DSM 23510	contig	GCA_016107555	306572.5	8068839146	306572	63.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17250	Psychrobacter celer 16S ribosomal RNA gene, partial sequence	AY842259	1495		306572

GC content

@ref	GC-content (mol%)	Method
17250	47.6	high performance liquid chromatography (HPLC)
31493	47.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychrobacter celer DSM 23510
NCBI: GCA_016107555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.80	no
125439	motility	BacteriaNetⓘ	yes	65.20	no
125439	gram_stain	BacteriaNetⓘ	negative	95.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter celer strain DSM 23510
PATRIC: 306572.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	98.04	no
125438	spore-forming	spore-formingⓘ	no	94.19	yes
125438	aerobic	aerobicⓘ	yes	87.68	no
125438	thermophilic	thermophileⓘ	no	98.94	yes
125438	flagellated	motile2+ⓘ	no	74.04	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory.	Paillet T, Lossouarn J, Figueroa C, Midoux C, Rue O, Petit MA, Dugat-Bony E.	Viruses	10.3390/v14081620	2022
Phylogeny	Psychrobacter halodurans sp. nov. and Psychrobacter coccoides sp. nov., two new slightly halophilic bacteria isolated from marine sediment.	Shang DD, Yang GJ, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005173	2022
Phylogeny	Psychrobacter aestuarii sp. nov., isolated from a tidal flat sediment.	Baik KS, Park SC, Lim CH, Lee KH, Jeon DY, Kim CM, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.016782-0	2009
Phylogeny	Psychrobacter celer sp. nov., isolated from sea water of the South Sea in Korea.	Yoon JH, Lee CH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63682-0	2005

References

#17250	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23510
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27791	IJSEM 1885 2005 ( DOI 10.1099/ijs.0.63682-0 , PubMed 16166683 )
#31493	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27791
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117232	Collection of Institut Pasteur ; Curators of the CIP; CIP 109014
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter celer (DSM 23510, JCM 12601, KCTC 12313)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016107555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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