Name: Psychrobacter celer SW-238
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8207

Type strain:

Species: Psychrobacter celer

Strain Designation: SW-238, JG-238

Culture col. no.: DSM 23510, JCM 12601, KCTC 12313, CIP 109014

Strain history: CIP <- 2005, JCM <- 2004, J.H. Yoon, KRIBB, Taejon, Korea: strain SW-238

NCBI tax ID(s): 306572 (species)

SI-ID 232816

KCTC 12313, JCM 12601, CIP 109014, DSM 23510

Section

Psychrobacter celer SW-238 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sea water.

Gram-negative
ovoid-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter celer**
	Full Scientific Name (LPSN)	Psychrobacter celer Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31493]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #117232]	Gram stain	negative

[Ref.: #31493]	Cell length	1.6 µm

[Ref.: #31493]	Cell width	1 µm

[Ref.: #31493]	Cell shape	ovoid-shaped
[Ref.: #117232]	Cell shape	coccus-shaped

[Ref.: #31493]	Motility	no
[Ref.: #117232]	Motility	no

[Ref.: #31493]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17250]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17250]

Culture medium growth

[Ref.: #17250]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17250]

Culture medium composition

expand / minimize

[Ref.: #117232]

Culture medium

CIP Medium 13

[Ref.: #117232]

Culture medium growth

[Ref.: #117232]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17250]	growth	28 °C
[Ref.: #31493]	growth	04-40 °C
[Ref.: #31493]	optimum	32.5 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17250]	Temperature range	mesophilic
[Ref.: #31493]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31493]			optimum	7.5
[Ref.: #31493]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31493]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #117232]	Oxygen tolerance	obligate aerobe

[Ref.: #31493]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31493]		NaCl		growth	0-16	%
[Ref.: #31493]		NaCl		optimum	2.5	%

[Ref.: #31493]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31493]	acetate ChEBI	+	carbon source
[Ref.: #31493]	arabinose ChEBI	+	carbon source
[Ref.: #31493]	glucose ChEBI	+	carbon source
[Ref.: #31493]	lactose ChEBI	+	carbon source
[Ref.: #31493]	malate ChEBI	+	carbon source
[Ref.: #31493]	melibiose ChEBI	+	carbon source
[Ref.: #117232]	nitrate ChEBI	-	reduction
[Ref.: #117232]	nitrite ChEBI	-	reduction
[Ref.: #31493]	pyruvate ChEBI	+	carbon source
[Ref.: #31493]	rhamnose ChEBI	+	carbon source
[Ref.: #31493]	ribose ChEBI	+	carbon source
[Ref.: #31493]	succinate ChEBI	+	carbon source
[Ref.: #31493]	tween 40 ChEBI	+	carbon source
[Ref.: #31493]	tween 80 ChEBI	+	carbon source
[Ref.: #31493]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117232]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #117232]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31493]	catalase	+	1.11.1.6
[Ref.: #117232]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31493]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117232]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #117232]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117232]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #117232]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117232]	11616	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17250]	Sample type/isolated from	sea water
[Ref.: #17250]	Geographic location (country and/or sea, region)	South Sea
[Ref.: #17250]	Country	Republic of Korea
[Ref.: #17250]	Country ISO 3 Code	KOR
[Ref.: #17250]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From jeotgal
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #117232]	Sample type/isolated from	Environment, Sea water
[Ref.: #117232]	Geographic location (country and/or sea, region)	South Sea
[Ref.: #117232]	Country	Republic of Korea
[Ref.: #117232]	Country ISO 3 Code	KOR
[Ref.: #117232]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY842259 (>99% sequence identity) for Psychrobacter celer from Microbeatlas

Aquatic Samples	90
Soil Samples	4
Animal Samples	134
Plant Samples	1
Total Samples	229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17250]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117232]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17250]	Psychrobacter celer 16S ribosomal RNA gene, partial sequence	AY842259	1495	ENA	306572 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter celer DSM 23510	GCA_016107555	contig	GenBank	306572 tax ID	*
[Ref.: #66792]	Psychrobacter celer strain DSM 23510	306572.5	wgs	PATRIC	306572 tax ID	*

[Ref.: #17250]	GC-content	47.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31493]	GC-content	47.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter celer strain DSM 23510 PATRIC: 306572.5
[Ref.: #69480]	gram-positive	no	98.187	yes
[Ref.: #69480]	anaerobic	no	98.975	no
[Ref.: #69480]	halophile	yes	81.991	no
[Ref.: #69480]	spore-forming	no	97.234	yes
[Ref.: #69480]	glucose-util	no	53.379	yes
[Ref.: #69480]	motile	no	87.715	yes
[Ref.: #69480]	flagellated	no	92.705	no
[Ref.: #69480]	aerobic	yes	83.436	no
[Ref.: #69480]	thermophile	no	99.359	yes
[Ref.: #69480]	glucose-ferment	no	93.731	no

Availability in culture collections External links

[Ref.: #17250]

Culture collection no.

DSM 23510, JCM 12601, KCTC 12313, CIP 109014

[Ref.: #77610]

SI-ID 232816

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter halodurans sp. nov. and Psychrobacter coccoides sp. nov., two new slightly halophilic bacteria isolated from marine sediment.	Shang DD, Yang GJ, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005173	2022	*
Phylogeny	Psychrobacter aestuarii sp. nov., isolated from a tidal flat sediment.	Baik KS, Park SC, Lim CH, Lee KH, Jeon DY, Kim CM, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.016782-0	2009	*
Phylogeny	Psychrobacter celer sp. nov., isolated from sea water of the South Sea in Korea.	Yoon JH, Lee CH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63682-0	2005	*

References

#17250

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23510

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31493

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27791 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77610

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232816.1 )

#117232 Collection of Institut Pasteur ; Curators of the CIP; CIP 109014

#27791

IJSEM 1885 2005 ( DOI 10.1099/ijs.0.63682-0 , PubMed 16166683 )

* These data were automatically processed and therefore are not curated

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Psychrobacter celer strain DSM 23510

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