Psychrobacter lutiphocae (DSM 21542, CCUG 56590, IMMIB L-1110)

Name: Psychrobacter lutiphocae (DSM 21542, CCUG 56590, IMMIB L-1110)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8208

Type strain

Strain Designation L-1110

Culture col. no. DSM 21542 CCUG 56590 IMMIB L-1110 CIP 110018 L-1110

NCBI tax ID(s) 1123033 540500

Special Collections DSMZ CCUG Literature strains CIP North Sea Microbiome

History <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB L-1110 CIP <- 2009, CCUG <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain L-1110

Links

Psychrobacter lutiphocae L-1110 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from faeces of a seal.

Gram-negative ovoid-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 364176

CCUG 56590,DSM 21542,CIP 110018

@ref 20215

Last LPSN update 2026-02-09 11:19:39

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter lutiphocae

Full scientific name Psychrobacter lutiphocae Yassin and Busse 2009

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29212	negative	ovoid-shaped
120712	negative	oval-shaped
125438	negative		98.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15782	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41770	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120712	CIP Medium 72	Medium recipe at CIP
120712	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15782	positive	growth	37	mesophilic
29212	positive	growth	10-37
29212	positive	optimum	23.5	psychrophilic
41770	positive	growth	37	mesophilic
61033	positive	growth	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29212	aerobe
61033	aerobe
120712	obligate aerobe
125439	obligate aerobe	98.8

Spore formation

@ref	Spore formation	Confidence
29212
125438		94.09
125439		91.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29212	NaCl	positive	growth	0-6 %
29212	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29212	25115 ChEBI	malate	+	carbon source
29212	17632 ChEBI	nitrate	+	reduction
120712	17632 ChEBI	nitrate	+	reduction
120712	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120712	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29212	catalase	+	1.11.1.6
120712	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29212	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120712	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
29212	urease	+	3.5.1.5
120712	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120712	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
15782	faeces of a seal		Schleswig-Holstein	Germany	DEU	Europe
61033	Seal feces	1993	Schleswig-Holstein	Germany	DEU	Europe
120712	Seal feces		Schleswig Holstein	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence FM165580 (>99% sequence identity) for Psychrobacter lutiphocae subclade from Microbeatlas

Aquatic Samples	286
Soil Samples	28
Animal Samples	333
Plant Samples	3
Total Samples	650

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15782	1	Risk group (German classification) According to TRBA 466
120712	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM38214v1 assembly for Psychrobacter lutiphocae DSM 21542	scaffold	GCA_000382145	1123033.3	2521172648	1123033	61.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15782	Psychrobacter lutiphocae partial 16S rRNA gene, type strain IMMIB L-1110T	FM165580	1502		540500

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychrobacter lutiphocae DSM 21542
NCBI: GCA_000382145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.60	no
125439	motility	BacteriaNetⓘ	no	59.40	no
125439	gram_stain	BacteriaNetⓘ	positive	67.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter lutiphocae DSM 21542 DSM 21542
NCBI: GCA_000382145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	93.26	no
125438	aerobic	aerobicⓘ	yes	76.67	no
125438	spore-forming	spore-formingⓘ	no	94.09	no
125438	thermophilic	thermophileⓘ	no	95.75	yes
125438	flagellated	motile2+ⓘ	no	80.18	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole genome sequence of the syntrophic benzoate-degrading bacterium, Syntrophus buswellii DSM 102354^T.	Gunsalus RP, Humm E, Cook L, Wofford NQ, James KL, Pellegrini M, Morselli M, Ha SM, McInerney MJ.	Microbiol Resour Announc	10.1128/mra.00266-25	2025
	In vitro conjugation kinetics of AmpC, broad spectrum and extended-spectrum beta-lactamase-producing Escherichia coli donors and various Enterobacteriaceae recipients.	Saliu EM, Zentek J, Vahjen W.	BMC Microbiol	10.1186/s12866-020-01787-7	2020
Metabolism	Prokaryotic viperins produce diverse antiviral molecules.	Bernheim A, Millman A, Ofir G, Meitav G, Avraham C, Avraham C, Shomar H, Rosenberg MM, Tal N, Melamed S, Amitai G, Sorek R.	Nature	10.1038/s41586-020-2762-2	2021
	Comparative Efficacy of a Novel Topical Formulation with Antimicrobial Peptides and Encapsulated Plant Extracts Versus Conventional Therapies for Canine Otitis Externa.	Bannach TC, Mongruel ACB, Evangelista AG, de Souza VBM, Voi R, Otuki MF, de Farias MR, Luciano FB.	Pathogens	10.3390/pathogens14111112	2025
Genetics	Functional Genomics of a Collection of Gammaproteobacteria Isolated from Antarctica.	Giovannini M, Vieri W, Bosi E, Riccardi C, Lo Giudice A, Fani R, Fondi M, Perrin E.	Mar Drugs	10.3390/md22060238	2024
	Rookery through rehabilitation: Microbial community assembly in newborn harbour seals after maternal separation.	Switzer AD, Callahan BJ, Costello EK, Bik EM, Fontaine C, Gulland FMD, Relman DA.	Environ Microbiol	10.1111/1462-2920.16444	2023
Phylogeny	Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey.	Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.000235	2015
Phylogeny	Psychrobacter lutiphocae sp. nov., isolated from the faeces of a seal.	Yassin AF, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.008706-0	2009

References

#15782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21542
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25633	IJSEM 2049 2009 ( DOI 10.1099/ijs.0.008706-0 , PubMed 19605717 )
#29212	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25633
#41770	; Curators of the CIP;
#61033	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56590
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120712	Collection of Institut Pasteur ; Curators of the CIP; CIP 110018
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter lutiphocae (DSM 21542, CCUG 56590, IMMIB L-1110)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000382145

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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