Name: Psychrobacter lutiphocae L-1110
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8208

Type strain:

Species: Psychrobacter lutiphocae

Strain Designation: L-1110

Culture col. no.: DSM 21542, CCUG 56590, IMMIB L-1110, CIP 110018

Strain history: CIP <- 2009, CCUG <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain L-1110

NCBI tax ID(s): 1123033 (strain), 540500 (species)

SI-ID 364176

CCUG 56590, DSM 21542, CIP 110018

Section

Psychrobacter lutiphocae L-1110 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from faeces of a seal.

Gram-negative
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter lutiphocae**
	Full Scientific Name (LPSN)	Psychrobacter lutiphocae Yassin and Busse 2009

Information on morphological and physiological properties Morphology

[Ref.: #29212]	Gram stain	negative
[Ref.: #120712]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #29212]	Cell shape	ovoid-shaped
[Ref.: #120712]	Cell shape	oval-shaped

[Ref.: #29212]	Motility	no
[Ref.: #120712]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %97.265

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15782]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15782]

Culture medium growth

[Ref.: #15782]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15782]

Culture medium composition

expand / minimize

[Ref.: #41770]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #41770]

Culture medium growth

[Ref.: #41770]

Culture medium composition

expand / minimize

[Ref.: #120712]

Culture medium

CIP Medium 72

[Ref.: #120712]

Culture medium growth

[Ref.: #120712]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120712]

Culture medium

CIP Medium 6

[Ref.: #120712]

Culture medium growth

[Ref.: #120712]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15782]	growth	37 °C
[Ref.: #29212]	growth	10-37 °C
[Ref.: #29212]	optimum	23.5 °C
[Ref.: #41770]	growth	37 °C
[Ref.: #61033]	growth	30-37 °C

[Ref.: #15782]	Temperature range	mesophilic
[Ref.: #29212]	Temperature range	psychrophilic
[Ref.: #41770]	Temperature range	mesophilic
[Ref.: #61033]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29212]	Oxygen tolerance	aerobe
[Ref.: #61033]	Oxygen tolerance	aerobe
[Ref.: #120712]	Oxygen tolerance	obligate aerobe

[Ref.: #29212]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29212]		NaCl		growth	0-6	%
[Ref.: #29212]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29212]	malate ChEBI	+	carbon source
[Ref.: #29212]	nitrate ChEBI	+	reduction
[Ref.: #120712]	nitrate ChEBI	+	reduction
[Ref.: #120712]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120712]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29212]	catalase	+	1.11.1.6
[Ref.: #120712]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29212]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120712]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29212]	urease	+	3.5.1.5
[Ref.: #120712]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120712]	12293	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15782]	Sample type/isolated from	faeces of a seal
[Ref.: #15782]	Geographic location (country and/or sea, region)	Schleswig-Holstein
[Ref.: #15782]	Country	Germany
[Ref.: #15782]	Country ISO 3 Code	DEU
[Ref.: #15782]	Continent	Europe

[Ref.: #61033]	Sample type/isolated from	Seal feces
[Ref.: #61033]	Sampling date	1993
[Ref.: #61033]	Geographic location (country and/or sea, region)	Schleswig-Holstein
[Ref.: #61033]	Country	Germany
[Ref.: #61033]	Country ISO 3 Code	DEU
[Ref.: #61033]	Continent	Europe

[Ref.: #120712]	Sample type/isolated from	Seal feces
[Ref.: #120712]	Geographic location (country and/or sea, region)	Schleswig Holstein
[Ref.: #120712]	Country	Germany
[Ref.: #120712]	Country ISO 3 Code	DEU
[Ref.: #120712]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FM165580 (>99% sequence identity) for Psychrobacter lutiphocae subclade from Microbeatlas

Aquatic Samples	286
Soil Samples	28
Animal Samples	333
Plant Samples	3
Total Samples	650

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15782]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120712]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15782]	Psychrobacter lutiphocae partial 16S rRNA gene, type strain IMMIB L-1110T	FM165580	1502	ENA	540500 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter lutiphocae DSM 21542	GCA_000382145	scaffold	GenBank	1123033 tax ID	*
[Ref.: #66792]	Psychrobacter lutiphocae DSM 21542	1123033.3	wgs	PATRIC	1123033 tax ID	*
[Ref.: #66792]	Psychrobacter lutiphocae DSM 21542	2521172648	draft	JGI IMG/M	1123033 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter lutiphocae DSM 21542 PATRIC: 1123033.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter lutiphocae DSM 21542 DSM 21542 NCBI: GCA_000382145.1
[Ref.: #69480]	motile	no	92.625	no
[Ref.: #69480]	flagellated	no	92.075	yes
[Ref.: #69480]	gram-positive	no	97.705	no
[Ref.: #69480]	anaerobic	no	97.869	yes
[Ref.: #69480]	aerobic	yes	85.871	yes
[Ref.: #69480]	halophile	yes	64.583	no
[Ref.: #69480]	spore-forming	no	96.078	yes
[Ref.: #69480]	thermophile	no	98.486	yes
[Ref.: #69480]	glucose-util	no	68.481	no
[Ref.: #69480]	glucose-ferment	no	92.135	no

Availability in culture collections External links

[Ref.: #15782]

Culture collection no.

DSM 21542, CCUG 56590, IMMIB L-1110, CIP 110018

[Ref.: #77611]

SI-ID 364176

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter lutiphocae sp. nov., isolated from the faeces of a seal.	Yassin AF, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.008706-0	2009	*

References

#15782

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21542

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29212

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25633 (see below)

#41770 ; Curators of the CIP;
#61033 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56590

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77611

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364176.1 )

#120712 Collection of Institut Pasteur ; Curators of the CIP; CIP 110018

#25633

IJSEM 2049 2009 ( DOI 10.1099/ijs.0.008706-0 , PubMed 19605717 )

* These data were automatically processed and therefore are not curated

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Psychrobacter lutiphocae DSM 21542

Psychrobacter lutiphocae DSM 21542 DSM 21542

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