Name: Psychrobacter alimentarius JG100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8189

Type strain:

Species: Psychrobacter alimentarius

Strain Designation: JG100

Culture col. no.: DSM 16065, KCTC 12186, JCM 12315, CIP 110989

Strain history: CIP <- 2015, DSMZ <- J.H. Yoon strain: JG100

NCBI tax ID(s): 261164 (species)

SI-ID 135132

DSM 16065, KCTC 12186, JCM 12315, CIP 110989

Other strains from Psychrobacter alimentarius

P. alimentarius JG102, DSM 16066, JCM 12316, KCTC ...

Section

Psychrobacter alimentarius JG100 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from traditional Korean fermented seafood.

coccus-shaped
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter alimentarius**
	Full Scientific Name (LPSN)	Psychrobacter alimentarius Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31253]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #116239]	Gram stain	negative

[Ref.: #31253]	Cell width	1.7 µm

[Ref.: #31253]	Cell shape	coccus-shaped
[Ref.: #116239]	Cell shape	rod-shaped

[Ref.: #31253]	Motility	no
[Ref.: #116239]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6251]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6251]

Culture medium growth

[Ref.: #6251]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6251]

Culture medium composition

expand / minimize

[Ref.: #41667]

Culture medium

Marine agar (MA)

[Ref.: #41667]

Culture medium growth

[Ref.: #41667]

Culture medium composition

expand / minimize

[Ref.: #116239]

Culture medium

CIP Medium 13

[Ref.: #116239]

Culture medium growth

[Ref.: #116239]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6251]	growth	28 °C
[Ref.: #31253]	growth	4.0-35 °C
[Ref.: #31253]	optimum	30 °C
[Ref.: #41667]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #6251]	Temperature range	mesophilic
[Ref.: #31253]	Temperature range	mesophilic
[Ref.: #41667]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31253]			optimum	6
[Ref.: #31253]			growth	5.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6251]	Oxygen tolerance	aerobe
[Ref.: #31253]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31253]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31253]		NaCl		growth	0.0-12	%
[Ref.: #31253]		NaCl		optimum	2.5	%

[Ref.: #67770]	Observation	quinones: Q-8
[Ref.: #67771]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31253]	acetate ChEBI	+	carbon source
[Ref.: #31253]	arabinose ChEBI	+	carbon source
[Ref.: #31253]	cellobiose ChEBI	+	carbon source
[Ref.: #31253]	citrate ChEBI	+	carbon source
[Ref.: #31253]	esculin ChEBI	+	hydrolysis
[Ref.: #31253]	galactose ChEBI	+	carbon source
[Ref.: #31253]	glucose ChEBI	+	carbon source
[Ref.: #31253]	lactose ChEBI	+	carbon source
[Ref.: #31253]	malate ChEBI	+	carbon source
[Ref.: #31253]	mannose ChEBI	+	carbon source
[Ref.: #31253]	melibiose ChEBI	+	carbon source
[Ref.: #31253]	pyruvate ChEBI	+	carbon source
[Ref.: #31253]	rhamnose ChEBI	+	carbon source
[Ref.: #31253]	ribose ChEBI	+	carbon source
[Ref.: #31253]	succinate ChEBI	+	carbon source
[Ref.: #31253]	tween 40 ChEBI	+	carbon source
[Ref.: #31253]	tween 80 ChEBI	+	carbon source
[Ref.: #31253]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31253]		acid phosphatase	+	3.1.3.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6251]	Sample type/isolated from	traditional Korean fermented seafood
[Ref.: #6251]	Country	Republic of Korea
[Ref.: #6251]	Country ISO 3 Code	KOR
[Ref.: #6251]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Squid jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From squid jeotgal
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #116239]	Sample type/isolated from	Food, Squid jeotgal, traditional Korean fermented seafood
[Ref.: #116239]	Country	Republic of Korea
[Ref.: #116239]	Country ISO 3 Code	KOR
[Ref.: #116239]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY513645 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	834
Soil Samples	114
Animal Samples	378
Plant Samples	37
Total Samples	1363

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6251]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116239]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6251]	Psychrobacter alimentarius strain JG-100 16S ribosomal RNA gene, partial sequence	AY513645	1494	ENA	261164 tax ID

[Ref.: #31253]	GC-content	44 mol%
[Ref.: #67770]	GC-content	44 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	44.0 mol%

Availability in culture collections External links

[Ref.: #6251]

Culture collection no.

DSM 16065, KCTC 12186, JCM 12315, CIP 110989

[Ref.: #77592]

SI-ID 135132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter alimentarius sp. nov., isolated from squid jeotgal, a traditional Korean fermented seafood.	Yoon JH, Yeo SH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.63140-0	2005	*

References

#6251

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16065

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31253

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27576 (see below)

#41667 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77592

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135132.1 )

#116239 Collection of Institut Pasteur ; Curators of the CIP; CIP 110989

#27576

IJSEM 171 2005 ( DOI 10.1099/ijs.0.63140-0 , PubMed 15653872 )

* These data were automatically processed and therefore are not curated

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