Strain identifier

BacDive ID: 8189

Type strain: Yes

Species: Psychrobacter alimentarius

Strain Designation: JG100

Strain history: CIP <- 2015, DSMZ <- J.H. Yoon strain: JG100

NCBI tax ID(s): 261164 (species)

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General

@ref: 6251

BacDive-ID: 8189

DSM-Number: 16065

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Psychrobacter alimentarius JG100 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from traditional Korean fermented seafood.

NCBI tax id

  • NCBI tax id: 261164
  • Matching level: species

strain history

@refhistory
6251<- J.-H. Yoon; JG100
67770J.-H. Yoon JG-100.
67771<- J.H. Yoon, KRIBB
116239CIP <- 2015, DSMZ <- J.H. Yoon strain: JG100

doi: 10.13145/bacdive8189.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter alimentarius
  • full scientific name: Psychrobacter alimentarius Yoon et al. 2005

@ref: 6251

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter alimentarius

full scientific name: Psychrobacter alimentarius Yoon et al. 2005

strain designation: JG100

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
31253negative1.7 µmcoccus-shapedno
67771negative
116239negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6251BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41667Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116239CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6251positivegrowth28mesophilic
31253positivegrowth4.0-35
31253positiveoptimum30mesophilic
41667positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31253positivegrowth5.0-7.5
31253positiveoptimum6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6251aerobe
31253facultative aerobe
67771aerobe

spore formation

  • @ref: 31253
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31253NaClpositivegrowth0.0-12 %
31253NaClpositiveoptimum2.5 %

observation

@refobservation
67770quinones: Q-8
67771quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3125330089acetate+carbon source
3125322599arabinose+carbon source
3125317057cellobiose+carbon source
3125316947citrate+carbon source
3125328260galactose+carbon source
3125317234glucose+carbon source
3125317716lactose+carbon source
3125325115malate+carbon source
3125337684mannose+carbon source
3125328053melibiose+carbon source
3125315361pyruvate+carbon source
3125326546rhamnose+carbon source
3125333942ribose+carbon source
3125330031succinate+carbon source
3125353423tween 40+carbon source
3125353426tween 80+carbon source
3125318222xylose+carbon source
312534853esculin+hydrolysis

enzymes

  • @ref: 31253
  • value: acid phosphatase
  • activity: +
  • ec: 3.1.3.2

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6251traditional Korean fermented seafoodRepublic of KoreaKORAsia
67770Squid jeotgal, traditional Korean fermented seafoodRepublic of KoreaKORAsia
67771From squid jeotgalRepublic of KoreaKORAsia
116239Food, Squid jeotgal, traditional Korean fermented seafoodRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_4732.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_4732&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AY513645
  • Sequence Identity:
  • Total samples: 1363
  • soil counts: 114
  • aquatic counts: 834
  • animal counts: 378
  • plant counts: 37

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
62511Risk group (German classification)
1162391Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6251
  • description: Psychrobacter alimentarius strain JG-100 16S ribosomal RNA gene, partial sequence
  • accession: AY513645
  • length: 1494
  • database: ena
  • NCBI tax ID: 261164

GC content

@refGC-contentmethod
3125344
6777044high performance liquid chromatography (HPLC)
6777144.0

External links

@ref: 6251

culture collection no.: DSM 16065, KCTC 12186, JCM 12315, CIP 110989

straininfo link

  • @ref: 77592
  • straininfo: 135132

literature

  • topic: Phylogeny
  • Pubmed-ID: 15653872
  • title: Psychrobacter alimentarius sp. nov., isolated from squid jeotgal, a traditional Korean fermented seafood.
  • authors: Yoon JH, Yeo SH, Oh TK, Park YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63140-0
  • year: 2005
  • mesh: Animals, Base Composition, DNA, Bacterial/analysis, Decapodiformes/*microbiology, Fermentation, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Psychrobacter/chemistry/*classification/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6251Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16065)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16065
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31253Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2757628776041
41667Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34596
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77592Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135132.1StrainInfo: A central database for resolving microbial strain identifiers
116239Curators of the CIPCollection of Institut Pasteur (CIP 110989)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110989