Name: Acidisoma tundrae WM1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 81

Type strain:

Species: Acidisoma tundrae

Strain Designation: WM1

Culture col. no.: DSM 19999, VKM B-2488

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; WM1 <- S. Belova

NCBI tax ID(s): 512382 (species)

SI-ID 364096

DSM 19999, VKM B-2488

Special Collections

Section

When using BacDive for research please cite our paper

Acidisoma tundrae WM1 is an obligate aerobe, chemoorganotroph, psychrophilic bacterium that forms circular colonies and was isolated from acidic oligotrophic Sphagnum-dominated wetland.

coccus-shaped
colony-forming
Gram-negative
chemoorganotroph
obligate aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidisoma*
	Species	**Acidisoma tundrae**
	Full Scientific Name (LPSN)	Acidisoma tundrae Belova et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #22964]	Gram stain	negative

[Ref.: #22964]	Cell length	1.9-4.1 µm

[Ref.: #22964]	Cell width	0.8-1.5 µm

[Ref.: #22964]	Cell shape	coccus-shaped

[Ref.: #22964]	Motility	no

[Ref.: #22964]	Colony size	2.0-5.0 mm
[Ref.: #22964]	Colony color	white or ivory
[Ref.: #22964]	Colony shape	circular
[Ref.: #22964]	Incubation period	14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8416]

Culture medium

ACIDOSOMA MEDIUM (DSMZ Medium 1220)

[Ref.: #8416]

Culture medium growth

[Ref.: #8416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8416]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8416]	growth	20 °C
[Ref.: #22964]	growth	2.0-30.0 °C
[Ref.: #22964]	optimum	15.0-22.0 °C

	pH	Kind of pH		pH
[Ref.: #22964]			optimum	4.5-5.7
[Ref.: #22964]			growth	3.0-7.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

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Nutrition type

chemoorganotroph

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #22964]		NaCl	no	growth	>1.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22964]	acetate ChEBI	-	growth
[Ref.: #22964]	alanine ChEBI	-	growth
[Ref.: #22964]	alanine ChEBI	+	nitrogen source
[Ref.: #22964]	alginate ChEBI	-	hydrolysis
[Ref.: #22964]	ammonium ChEBI	+	nitrogen source
[Ref.: #22964]	arabinose ChEBI	+	carbon source
[Ref.: #22964]	aspartate ChEBI	-	growth
[Ref.: #22964]	benzoate ChEBI	-	growth
[Ref.: #22964]	butanol ChEBI	-	growth
[Ref.: #22964]	butyrate ChEBI	+	carbon source
[Ref.: #22964]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #22964]	casamino acids	+	carbon source
[Ref.: #22964]	cellobiose ChEBI	-	growth
[Ref.: #22964]	chondroitin sulfate ChEBI	-	hydrolysis
[Ref.: #22964]	citrate ChEBI	-	growth
[Ref.: #22964]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #22964]	D-glucuronate ChEBI	-	growth
[Ref.: #22964]	esculin ChEBI	+	hydrolysis
[Ref.: #22964]	ethanol ChEBI	+	carbon source
[Ref.: #22964]	formate ChEBI	-	growth
[Ref.: #22964]	fructose ChEBI	+	carbon source
[Ref.: #22964]	fucoidan ChEBI	+	hydrolysis
[Ref.: #22964]	fumarate ChEBI	-	growth
[Ref.: #22964]	galactitol ChEBI	+	carbon source
[Ref.: #22964]	galactose ChEBI	+	carbon source
[Ref.: #22964]	gluconate ChEBI	+	carbon source
[Ref.: #22964]	glucose ChEBI	+	carbon source
[Ref.: #22964]	glutamine ChEBI	+	nitrogen source
[Ref.: #22964]	glycerol ChEBI	+	carbon source
[Ref.: #22964]	heparin ChEBI	+	hydrolysis
[Ref.: #22964]	hexanoate ChEBI	-	growth
[Ref.: #22964]	histidine ChEBI	+	nitrogen source
[Ref.: #22964]	L-asparagine ChEBI	+	carbon source
[Ref.: #22964]	lactate ChEBI	+	carbon source
[Ref.: #22964]	lactose ChEBI	-	growth
[Ref.: #22964]	laminarin ChEBI	-	hydrolysis
[Ref.: #22964]	leucine ChEBI	-	growth
[Ref.: #22964]	malate ChEBI	+	carbon source
[Ref.: #22964]	maltose ChEBI	-	growth
[Ref.: #22964]	mannitol ChEBI	+	carbon source
[Ref.: #22964]	mannose ChEBI	+	carbon source
[Ref.: #22964]	methanol ChEBI	-	growth
[Ref.: #22964]	methionine ChEBI	+	nitrogen source
[Ref.: #22964]	myo-inositol ChEBI	+	carbon source
[Ref.: #22964]	nitrate ChEBI	-	reduction
[Ref.: #22964]	nitrate ChEBI	+	nitrogen source
[Ref.: #22964]	oxalate ChEBI	-	growth
[Ref.: #22964]	pectin ChEBI	+	hydrolysis
[Ref.: #22964]	peptone	+	carbon source
[Ref.: #22964]	proline ChEBI	+	nitrogen source
[Ref.: #22964]	propionate ChEBI	-	growth
[Ref.: #22964]	pullulan ChEBI	-	hydrolysis
[Ref.: #22964]	pyruvate ChEBI	+	carbon source
[Ref.: #22964]	raffinose ChEBI	-	growth
[Ref.: #22964]	sorbitol ChEBI	+	carbon source
[Ref.: #22964]	sorbose ChEBI	+	carbon source
[Ref.: #22964]	starch ChEBI	+	hydrolysis
[Ref.: #22964]	succinate ChEBI	-	growth
[Ref.: #22964]	sucrose ChEBI	-	growth
[Ref.: #22964]	trehalose ChEBI	+	carbon source
[Ref.: #22964]	urea ChEBI	+	nitrogen source
[Ref.: #22964]	xylan ChEBI	+	hydrolysis
[Ref.: #22964]	xylose ChEBI	+	carbon source
[Ref.: #22964]	yeast extract	+	carbon source
[Ref.: #22964]	yeast extract	+	nitrogen source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #22964]	ampicillin ChEBI		yes
[Ref.: #22964]	chloramphenicol ChEBI	yes
[Ref.: #22964]	gentamicin ChEBI	yes
[Ref.: #22964]	kanamycin ChEBI	yes
[Ref.: #22964]	lincomycin ChEBI		yes
[Ref.: #22964]	neomycin ChEBI	yes
[Ref.: #22964]	novobiocin ChEBI	yes
[Ref.: #22964]	streptomycin ChEBI	yes

	Metabolite production	Metabolite	Production
[Ref.: #22964]		bacteriochlorophyll alpha ChEBI	no
[Ref.: #22964]		beta-hydroxybutyrate ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #22964]	acid phosphatase	+	3.1.3.2
[Ref.: #22964]	alkaline phosphatase	-	3.1.3.1
[Ref.: #22964]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #22964]	alpha-fucosidase	-	3.2.1.51
[Ref.: #22964]	alpha-galactosidase	-	3.2.1.22
[Ref.: #22964]	alpha-glucosidase	+	3.2.1.20
[Ref.: #22964]	alpha-mannosidase	-	3.2.1.24
[Ref.: #22964]	beta-galactosidase	-	3.2.1.23
[Ref.: #22964]	beta-glucosidase	-	3.2.1.21
[Ref.: #22964]	beta-glucuronidase	-	3.2.1.31
[Ref.: #22964]	catalase	+	1.11.1.6
[Ref.: #22964]	cystine arylamidase	+	3.4.11.3
[Ref.: #22964]	cytochrome oxidase	+	1.9.3.1
[Ref.: #22964]	esterase	+
[Ref.: #22964]	esterase lipase (C 8)	+
[Ref.: #22964]	leucine arylamidase	+	3.4.11.1
[Ref.: #22964]	lipase (C 14)	-
[Ref.: #22964]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #22964]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #22964]	phosphatidate phosphatase	+	3.1.3.4
[Ref.: #22964]	trypsin	-	3.4.21.4
[Ref.: #22964]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8416]	Sample type/isolated from	acidic oligotrophic Sphagnum-dominated wetland
[Ref.: #8416]	Host species	Sphagnum
[Ref.: #8416]	Geographic location (country and/or sea, region)	Vorkuta region
[Ref.: #8416]	Country	Russia
[Ref.: #8416]	Country ISO 3 Code	RUS
[Ref.: #8416]	Continent	Asia
[Ref.: #8416]	Geographic location	67.0000°/63.0000°

[Ref.: #22964]	Sample type/isolated from	wetland
[Ref.: #22964]	Geographic location (country and/or sea, region)	Vorkuta region
[Ref.: #22964]	Country	Russia
[Ref.: #22964]	Country ISO 3 Code	RUS
[Ref.: #22964]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Peat moss
#Condition	#Acidic	-
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM947652 (>99% sequence identity) for Acidisoma tundrae subclade from Microbeatlas

Aquatic Samples	184
Soil Samples	566
Animal Samples	125
Plant Samples	178
Total Samples	1053

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8416]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8416]	Acidisoma tundrae partial 16S rRNA gene, type strain WM1	AM947652	1400	GenBank ENA	512382 tax ID

[Ref.: #8416]

GC-content

61.9 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #8416]

Culture collection no.

DSM 19999, VKM B-2488

[Ref.: #69764]

SI-ID 364096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidisoma tundrae gen. nov., sp. nov. and Acidisoma sibiricum sp. nov., two acidophilic, psychrotolerant members of the Alphaproteobacteria from acidic northern wetlands.	Belova SE, Pankratov TA, Detkova EN, Kaparullina EN, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.009209-0	2009	*

References

#8416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19999

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22964

Svetlana E. Belova,Timofei A. Pankratov,Ekaterina N. Detkova,Elena N. Kaparullina,Svetlana N. Dedysh: Acidisoma tundrae gen. nov., sp. nov. and Acidisoma sibiricum sp. nov., two acidophilic, psychrotolerant members of the Alphaproteobacteria from acidic northern wetlands. IJSEM 59: 2283 - 2290 2009 ( DOI 10.1099/ijs.0.009209-0 , PubMed 19620354 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69764

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364096.1 )

* These data were automatically processed and therefore are not curated

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