Acinetobacter johnsonii | Type strain | DSM 6963, ATCC 17909, CIP 64.6, NCTC 10308, CCUG 19095, NCTC 12154

Strain identifier

BacDive ID: 8088

Type strain:

Species: Acinetobacter johnsonii

Culture col. no.: DSM 6963, ATCC 17909, CIP 64.6, NCTC 10308, CCUG 19095, NCTC 12154

Strain history: 1964, W. Mannheim, Hyg. Inst., Marburg, Germany: strain 3865/60, "Achromobacter metalcaligenes"

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Acinetobacter johnsonii DSM 6963 is an aerobe, mesophilic bacterium that was isolated from human duodenum.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Pseudomonadales
	Family	Moraxellaceae
	Genus	Acinetobacter
	Species	Acinetobacter johnsonii
	Full Scientific Name (PNU)	Acinetobacter johnsonii Bouvet and Grimont 1986

Information on morphological and physiological propertiesMorphology

[Ref.: #2924]	Type of hemolysis	gamma
[Ref.: #2924]	Incubation period	1-2 days

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #2924]

Culture medium

Nutrient agar (NA)

[Ref.: #2924]

Culture medium growth

[Ref.: #2924]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #2924]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2924]

Culture medium growth

[Ref.: #2924]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #42154]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42154]

Culture medium growth

[Ref.: #42154]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2924]	growth	28 ̊C
[Ref.: #42154]	growth	30 ̊C
[Ref.: #46953]	growth	28-37 ̊C

[Ref.: #2924]	Temperature range	mesophilic
[Ref.: #42154]	Temperature range	mesophilic
[Ref.: #46953]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #46953]

Oxygen tolerance

aerobe

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #2924]		catalase	+	1.11.1.6
[Ref.: #2924]		cytochrome-c oxidase	-	1.9.3.1

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2924]	13800	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-
[Ref.: #2924]	13799	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	not determinedn.d.
[Ref.: #2924]	13798	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #46953]	734	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #2924]	Sample type/isolated from	human duodenum

[Ref.: #46953]	Sample type/isolated from	Duodenum

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Small intestine

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #2924]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Acinetobacter johnsonii a6aw 16S ribosomal RNA gene, partial sequence	AF311990	496	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii a6b 16S ribosomal RNA gene, partial sequence	AF311991	496	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii a25 16S ribosomal RNA gene, partial sequence	AF311992	493	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii a39b 16S ribosomal RNA gene, partial sequence	AF311993	493	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii a22 16S ribosomal RNA gene, partial sequence	AF311994	489	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii 16S rRNA gene, partial	AJ247202	452	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 01	HE651868	693	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 03	HE651869	707	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 04	HE651870	717	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 05	HE651871	707	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 06	HE651872	731	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 09	HE651873	731	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 11	HE651874	717	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 12	HE651875	707	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 13	HE651876	717	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 14	HE651877	693	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 15	HE651878	693	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 16	HE651879	703	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 18	HE651880	717	ENA	40214 tax ID	*
[Ref.: #20218]	Acinetobacter johnsonii 16S rRNA gene (strain ATCC 17909T)	Z93440	1417	ENA	40214 tax ID	*
[Ref.: #2924]	A.johnsonii 16S rRNA gene (DSM6963)	X81663	1460	ENA	40214 tax ID
[Ref.: #2924]	Acinetobacter johnsonii 16S rRNA gene, strain ATCC 17909	HE651920	1530	ENA	40214 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter johnsonii M19	GCA_004337595	complete	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii IC001	GCA_003952785	complete	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii Acsw19	GCA_008180305	complete	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii LXL_C1	GCA_003335165	complete	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii CIP 64.6	GCA_000368045	scaffold	GenBank	1217663 tax ID
[Ref.: #66792]	Acinetobacter johnsonii DSM 6963	GCA_000949655	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii NCTC10308	GCA_900444855	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii AJ-1	GCA_013186005	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii B23	GCA_012271875	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii C6	GCA_900162715	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii 18QD2AZ57W	GCA_009828985	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii UCO-489	GCA_009789205	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii JH7	GCA_009823385	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii MB44	GCA_001483265	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii AJ01M	GCA_900199565	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii WCHAJo010049	GCA_004211815	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii Aj2199	GCA_001632325	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii AJ_385	GCA_003940285	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii AJ_082	GCA_003939325	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii AJ1	GCA_012371395	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii TUM15505	GCA_009012975	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii HAMBI_97	GCA_003350215	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii NBRC 102197	GCA_007989645	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii UBA2045	GCA_002333325	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii UBA11272	GCA_003523415	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S2_003_000_R3_20	GCA_003241525	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii UBA8888	GCA_003446165	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii UBA3112	GCA_002365955	scaffold	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S2_018_000_R3_109	GCA_003240765	contig	GenBank	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii CIP 64.6	1217663.8	wgs	PATRIC	1217663 tax ID
[Ref.: #66792]	Acinetobacter johnsonii CIP 64.6	1217663.3	wgs	PATRIC	1217663 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain 18QD2AZ57W	40214.86	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain AJ01M	40214.28	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain AJ01M	40214.35	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain AJ_082	40214.49	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain AJ_385	40214.50	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain Acsw19	40214.63	complete	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain Aj2199	40214.23	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain Aj2199	40214.31	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain C6	40214.26	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain C6	40214.34	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain DSM 6963	40214.29	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain DSMZ 6963	40214.15	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain HAMBI_97	40214.44	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain IC001	40214.51	complete	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain JH7	40214.85	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain LXL_C1	40214.43	complete	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain M19	40214.60	complete	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain MB44	40214.30	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain MB44	40214.16	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain NBRC 102197	40214.62	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain NCTC10308	40214.47	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain S2_003_000_R3_20	40214.42	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain S2_018_000_R3_109	40214.41	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain TUM15505	40214.67	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UBA11272	40214.46	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UBA2045	40214.32	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UBA2045	40214.27	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UBA3112	40214.33	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UBA8888	40214.45	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain UCO-489	40214.84	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii strain WCHAJo010049	40214.59	wgs	PATRIC	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S00050	2864804954	permanent	JGI IMG/M	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S00075	2864843793	permanent	JGI IMG/M	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S00116	2864863795	permanent	JGI IMG/M	40214 tax ID
[Ref.: #66792]	Acinetobacter johnsonii S00071	2864840607	permanent	JGI IMG/M	40214 tax ID

[Ref.: #2924]

GC-content

44.0 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collectionsExternal links

[Ref.: #2924]

Culture collection no.

DSM 6963, ATCC 17909, CIP 64.6, NCTC 10308, CCUG 19095, NCTC 12154

[Ref.: #20218]

Associated Passport(s) in StrainInfo

99496, 51543, 231555, 51555

References

#2924

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6963

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42154 ; Curators of the CIP;
#46953 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19095

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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