Strain identifier

BacDive ID: 8088

Type strain: Yes

Species: Acinetobacter johnsonii

Culture col. no.: DSM 6963, ATCC 17909, CIP 64.6, NCTC 10308, CCUG 19095, NCTC 12154

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General

@ref: 2924

BacDive-ID: 8088

DSM-Number: 6963

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Acinetobacter johnsonii DSM 6963 is an aerobe, mesophilic bacterium that was isolated from human duodenum.

strain history

doi: 10.13145/bacdive8088.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter johnsonii
  • full scientific name: Acinetobacter johnsonii Bouvet and Grimont 1986

@ref: 2924

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter johnsonii

full scientific name: Acinetobacter johnsonii Bouvet and Grimont 1986

type strain: yes

Morphology

colony morphology

  • @ref: 2924
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2924Nutrient agar (NA)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
2924CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
42154MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
2924positivegrowth28mesophilic
42154positivegrowth30mesophilic
46953positivegrowth28-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46953
  • oxygen tolerance: aerobe

enzymes

@refvalueactivityec
2924catalase+1.11.1.6
2924cytochrome-c oxidase-1.9.3.1

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2924---------------+-----
2924---------------+--+-
2924---------------+-+---

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46953--------+----------------------+

Isolation, sampling and environmental information

isolation

@refsample type
2924human duodenum
46953Duodenum

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Gastrointestinal tract#Small intestine

Safety information

risk assessment

  • @ref: 2924
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter johnsonii a6aw 16S ribosomal RNA gene, partial sequenceAF311990496ena40214
20218Acinetobacter johnsonii a6b 16S ribosomal RNA gene, partial sequenceAF311991496ena40214
20218Acinetobacter johnsonii a25 16S ribosomal RNA gene, partial sequenceAF311992493ena40214
20218Acinetobacter johnsonii a39b 16S ribosomal RNA gene, partial sequenceAF311993493ena40214
20218Acinetobacter johnsonii a22 16S ribosomal RNA gene, partial sequenceAF311994489ena40214
20218Acinetobacter johnsonii 16S rRNA gene, partialAJ247202452ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 01HE651868693ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 03HE651869707ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 04HE651870717ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 05HE651871707ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 06HE651872731ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 09HE651873731ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 11HE651874717ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 12HE651875707ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 13HE651876717ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 14HE651877693ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 15HE651878693ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 16HE651879703ena40214
20218Acinetobacter johnsonii genomic DNA containing 16S-23S IGS, strain ATCC 17909, clone 18HE651880717ena40214
20218Acinetobacter johnsonii 16S rRNA gene (strain ATCC 17909T)Z934401417ena40214
2924A.johnsonii 16S rRNA gene (DSM6963)X816631460ena40214
2924Acinetobacter johnsonii 16S rRNA gene, strain ATCC 17909HE6519201530ena40214

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter johnsonii M19GCA_004337595completencbi40214
66792Acinetobacter johnsonii IC001GCA_003952785completencbi40214
66792Acinetobacter johnsonii Acsw19GCA_008180305completencbi40214
66792Acinetobacter johnsonii LXL_C1GCA_003335165completencbi40214
66792Acinetobacter johnsonii CIP 64.6GCA_000368045scaffoldncbi1217663
66792Acinetobacter johnsonii DSM 6963GCA_000949655contigncbi40214
66792Acinetobacter johnsonii NCTC10308GCA_900444855contigncbi40214
66792Acinetobacter johnsonii AJ-1GCA_013186005contigncbi40214
66792Acinetobacter johnsonii B23GCA_012271875contigncbi40214
66792Acinetobacter johnsonii C6GCA_900162715contigncbi40214
66792Acinetobacter johnsonii 18QD2AZ57WGCA_009828985contigncbi40214
66792Acinetobacter johnsonii UCO-489GCA_009789205contigncbi40214
66792Acinetobacter johnsonii JH7GCA_009823385scaffoldncbi40214
66792Acinetobacter johnsonii MB44GCA_001483265contigncbi40214
66792Acinetobacter johnsonii AJ01MGCA_900199565contigncbi40214
66792Acinetobacter johnsonii WCHAJo010049GCA_004211815contigncbi40214
66792Acinetobacter johnsonii Aj2199GCA_001632325contigncbi40214
66792Acinetobacter johnsonii AJ_385GCA_003940285scaffoldncbi40214
66792Acinetobacter johnsonii AJ_082GCA_003939325scaffoldncbi40214
66792Acinetobacter johnsonii AJ1GCA_012371395scaffoldncbi40214
66792Acinetobacter johnsonii TUM15505GCA_009012975contigncbi40214
66792Acinetobacter johnsonii HAMBI_97GCA_003350215scaffoldncbi40214
66792Acinetobacter johnsonii NBRC 102197GCA_007989645contigncbi40214
66792Acinetobacter johnsonii UBA2045GCA_002333325scaffoldncbi40214
66792Acinetobacter johnsonii UBA11272GCA_003523415scaffoldncbi40214
66792Acinetobacter johnsonii S2_003_000_R3_20GCA_003241525contigncbi40214
66792Acinetobacter johnsonii UBA8888GCA_003446165scaffoldncbi40214
66792Acinetobacter johnsonii UBA3112GCA_002365955scaffoldncbi40214
66792Acinetobacter johnsonii S2_018_000_R3_109GCA_003240765contigncbi40214
66792Acinetobacter johnsonii CIP 64.61217663.8wgspatric1217663
66792Acinetobacter johnsonii CIP 64.61217663.3wgspatric1217663
66792Acinetobacter johnsonii strain 18QD2AZ57W40214.86wgspatric40214
66792Acinetobacter johnsonii strain AJ01M40214.28wgspatric40214
66792Acinetobacter johnsonii strain AJ01M40214.35wgspatric40214
66792Acinetobacter johnsonii strain AJ_08240214.49wgspatric40214
66792Acinetobacter johnsonii strain AJ_38540214.50wgspatric40214
66792Acinetobacter johnsonii strain Acsw1940214.63completepatric40214
66792Acinetobacter johnsonii strain Aj219940214.23wgspatric40214
66792Acinetobacter johnsonii strain Aj219940214.31wgspatric40214
66792Acinetobacter johnsonii strain C640214.26wgspatric40214
66792Acinetobacter johnsonii strain C640214.34wgspatric40214
66792Acinetobacter johnsonii strain DSM 696340214.29wgspatric40214
66792Acinetobacter johnsonii strain DSMZ 696340214.15wgspatric40214
66792Acinetobacter johnsonii strain HAMBI_9740214.44wgspatric40214
66792Acinetobacter johnsonii strain IC00140214.51completepatric40214
66792Acinetobacter johnsonii strain JH740214.85wgspatric40214
66792Acinetobacter johnsonii strain LXL_C140214.43completepatric40214
66792Acinetobacter johnsonii strain M1940214.60completepatric40214
66792Acinetobacter johnsonii strain MB4440214.30wgspatric40214
66792Acinetobacter johnsonii strain MB4440214.16wgspatric40214
66792Acinetobacter johnsonii strain NBRC 10219740214.62wgspatric40214
66792Acinetobacter johnsonii strain NCTC1030840214.47wgspatric40214
66792Acinetobacter johnsonii strain S2_003_000_R3_2040214.42wgspatric40214
66792Acinetobacter johnsonii strain S2_018_000_R3_10940214.41wgspatric40214
66792Acinetobacter johnsonii strain TUM1550540214.67wgspatric40214
66792Acinetobacter johnsonii strain UBA1127240214.46wgspatric40214
66792Acinetobacter johnsonii strain UBA204540214.32wgspatric40214
66792Acinetobacter johnsonii strain UBA204540214.27wgspatric40214
66792Acinetobacter johnsonii strain UBA311240214.33wgspatric40214
66792Acinetobacter johnsonii strain UBA888840214.45wgspatric40214
66792Acinetobacter johnsonii strain UCO-48940214.84wgspatric40214
66792Acinetobacter johnsonii strain WCHAJo01004940214.59wgspatric40214
66792Acinetobacter johnsonii S000502864804954permanentimg40214
66792Acinetobacter johnsonii S000752864843793permanentimg40214
66792Acinetobacter johnsonii S001162864863795permanentimg40214
66792Acinetobacter johnsonii S000712864840607permanentimg40214

GC content

  • @ref: 2924
  • GC-content: 44.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2924

culture collection no.: DSM 6963, ATCC 17909, CIP 64.6, NCTC 10308, CCUG 19095, NCTC 12154

straininfo link

@refpassport
20218http://www.straininfo.net/strains/99496
20218http://www.straininfo.net/strains/51543
20218http://www.straininfo.net/strains/231555
20218http://www.straininfo.net/strains/51555

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2924Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6963)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6963
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42154Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10105
46953Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 19095)https://www.ccug.se/strain?id=19095
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)