Acinetobacter junii 64.5 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from human urine.
Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter junii |
| Full scientific name Acinetobacter junii Bouvet and Grimont 1986 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2925 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 42155 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120367 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 120367 | 16947 ChEBI | citrate | + | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 120367 | 17632 ChEBI | nitrate | + | reduction | |
| 120367 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 120367 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 120367 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120367 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120367 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120367 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120367 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120367 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120367 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 46338_C01 assembly for Acinetobacter junii NCTC10307 | contig | 40215 | 78.56 | ||||
| 124043 | Acin_juni_CIP_64_5_V1 assembly for Acinetobacter junii CIP 64.5 | scaffold | 1217664 | 71.24 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Acinetobacter junii 16S rRNA gene, partial | AJ247204 | 452 | 40215 | ||
| 20218 | Acinetobacter junii genomic DNA containing 16S-23S IGS, strain ATCC 17908, direct sequence All | HE651782 | 707 | 40215 | ||
| 20218 | Acinetobacter junii 16S rRNA gene, strain ATCC 17908 | HE651916 | 1529 | 40215 | ||
| 20218 | Acinetobacter junii 16S rRNA gene (strain ATCC 17908T) | Z93438 | 1416 | 40215 | ||
| 2925 | A.junii 16S rRNA gene (DSM6964) | X81664 | 1459 | 40215 | ||
| 124043 | Acinetobacter junii 16S rRNA gene, type strain LMG 998 | AM410704 | 1406 | 40215 | ||
| 124043 | Acinetobacter junii strain ATCC 17908 16S ribosomal RNA gene, partial sequence. | MK184296 | 1529 | 40215 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 2925 | 42.0 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 50.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 95.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.33 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 93.99 | no |
| 125438 | aerobic | aerobicⓘ | yes | 92.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 75.92 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Biodegradation of Oil by a Newly Isolated Strain Acinetobacter junii WCO-9 and Its Comparative Pan-Genome Analysis. | Jiang S, Fan Q, Zhang Z, Deng Y, Wang L, Dai Q, Wang J, Lin M, Zhou J, Long Z, He G, Zhou Z. | Microorganisms | 10.3390/microorganisms11020407 | 2023 | |
| Bacterial diversity in water from Xifeng Hot Spring in China. | Wu L, Long H, Huang S, Niu X, Li S, Yu X, You L, Ran X, Wang J. | Braz J Microbiol | 10.1007/s42770-023-01070-7 | 2023 | ||
| ZnO-Doped Metal-Organic Frameworks Nanoparticles: Antibacterial Activity and Mechanisms. | Zheng H, Zhong B, Wang Q, Li X, Chen J, Liu L, Liu T. | Int J Mol Sci | 10.3390/ijms241512238 | 2023 | ||
| Probiotic Therapy During Vaccination Alters Antibody Response to Simian-Human Immunodeficiency Virus Infection But Not to Commensals. | Wilson A, Manuzak JA, Liang H, Leda AR, Klatt N, Lynch RM. | AIDS Res Hum Retroviruses | 10.1089/aid.2022.0123 | 2023 | ||
| Pathogenicity | Cathelicidin-OA1, a novel antioxidant peptide identified from an amphibian, accelerates skin wound healing. | Cao X, Wang Y, Wu C, Li X, Fu Z, Yang M, Bian W, Wang S, Song Y, Tang J, Yang X. | Sci Rep | 10.1038/s41598-018-19486-9 | 2018 | |
| Gut Bacteria Induce Granzyme B Expression in Human Colonic ILC3s In Vitro in an IL-15-Dependent Manner. | Castleman MJ, Dillon SM, Thompson TA, Santiago ML, McCarter MD, Barker E, Wilson CC. | J Immunol | 10.4049/jimmunol.2000239 | 2021 | ||
| Granzyme B+ CD4 T cells accumulate in the colon during chronic HIV-1 infection. | Dillon SM, Mickens KL, Thompson TA, Cooper EH, Nesladek S, Christians AJ, Castleman M, Guo K, Wood C, Frank DN, Kechris K, Santiago ML, Wilson CC. | Gut Microbes | 10.1080/19490976.2022.2045852 | 2022 | ||
| Development of a Colloidal Gold-Based Immunochromatographic Strip for Rapid Detection of Klebsiella pneumoniae Serotypes K1 and K2. | Siu LK, Tsai YK, Lin JC, Chen TL, Fung CP, Chang FY. | J Clin Microbiol | 10.1128/jcm.01608-16 | 2016 | ||
| Commensal and Pathogenic Bacteria Indirectly Induce IL-22 but Not IFNgamma Production From Human Colonic ILC3s via Multiple Mechanisms. | Castleman MJ, Dillon SM, Purba CM, Cogswell AC, Kibbie JJ, McCarter MD, Santiago ML, Barker E, Wilson CC. | Front Immunol | 10.3389/fimmu.2019.00649 | 2019 | ||
| Enteric bacteria induce IFNgamma and Granzyme B from human colonic Group 1 Innate Lymphoid Cells. | Castleman MJ, Dillon SM, Purba C, Cogswell AC, McCarter M, Barker E, Wilson C. | Gut Microbes | 10.1080/19490976.2019.1667723 | 2020 | ||
| Rapid identification of Acinetobacter spp. by fluorescence in situ hybridization (FISH) from colony and blood culture material. | Frickmann H, Essig A, Hagen RM, Riecker M, Jerke K, Ellison D, Poppert S. | Eur J Microbiol Immunol (Bp) | 10.1556/eujmi.1.2011.4.4 | 2011 | ||
| Enzymology | Rapid detection of Brucella spp. in blood cultures by fluorescence in situ hybridization. | Wellinghausen N, Nockler K, Sigge A, Bartel M, Essig A, Poppert S. | J Clin Microbiol | 10.1128/jcm.44.5.1828-1830.2006 | 2006 | |
| Pathogenicity | The first identified cathelicidin from tree frogs possesses anti-inflammatory and partial LPS neutralization activities. | Mu L, Zhou L, Yang J, Zhuang L, Tang J, Liu T, Wu J, Yang H. | Amino Acids | 10.1007/s00726-017-2449-7 | 2017 | |
| Pathogenicity | Burkholderia is highly resistant to human Beta-defensin 3. | Sahly H, Schubert S, Harder J, Rautenberg P, Ullmann U, Schroder J, Podschun R. | Antimicrob Agents Chemother | 10.1128/aac.47.5.1739-1741.2003 | 2003 | |
| Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection. | Hensley-McBain T, Wu MC, Manuzak JA, Cheu RK, Gustin A, Driscoll CB, Zevin AS, Miller CJ, Coronado E, Smith E, Chang J, Gale M, Somsouk M, Burgener AD, Hunt PW, Hope TJ, Collier AC, Klatt NR. | PLoS Pathog | 10.1371/journal.ppat.1007672 | 2019 | ||
| Enzymology | Quantitative real-time Legionella PCR for environmental water samples: data interpretation. | Joly P, Falconnet PA, Andre J, Weill N, Reyrolle M, Vandenesch F, Maurin M, Etienne J, Jarraud S. | Appl Environ Microbiol | 10.1128/aem.72.4.2801-2808.2006 | 2006 | |
| Survival of Acinetobacter baumannii on dry surfaces. | Wendt C, Dietze B, Dietz E, Ruden H. | J Clin Microbiol | 10.1128/jcm.35.6.1394-1397.1997 | 1997 | ||
| Enzymology | Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical Pseudomonas aeruginosa, from patients with cystic fibrosis. | Wellinghausen N, Kothe J, Wirths B, Sigge A, Poppert S. | J Clin Microbiol | 10.1128/jcm.43.8.4070-4075.2005 | 2005 | |
| Enzymology | Influence of relative humidity and suspending menstrua on survival of Acinetobacter spp. on dry surfaces. | Jawad A, Heritage J, Snelling AM, Gascoyne-Binzi DM, Hawkey PM. | J Clin Microbiol | 10.1128/jcm.34.12.2881-2887.1996 | 1996 | |
| Enzymology | Detection of Legionella species in respiratory specimens using PCR with sequencing confirmation. | Cloud JL, Carroll KC, Pixton P, Erali M, Hillyard DR. | J Clin Microbiol | 10.1128/jcm.38.5.1709-1712.2000 | 2000 | |
| Metabolism | Identification and analysis of a gene encoding L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase involved in the 1,3-diaminopropane production pathway in Acinetobacter baumannii. | Ikai H, Yamamoto S. | J Bacteriol | 10.1128/jb.179.16.5118-5125.1997 | 1997 | |
| Plasmid DNA fingerprinting of Acinetobacter species other than Acinetobacter baumannii. | Seifert H, Schulze A, Baginski R, Pulverer G. | J Clin Microbiol | 10.1128/jcm.32.1.82-86.1994 | 1994 | ||
| Enzymology | Detection of legionellae in hospital water samples by quantitative real-time LightCycler PCR. | Wellinghausen N, Frost C, Marre R. | Appl Environ Microbiol | 10.1128/aem.67.9.3985-3993.2001 | 2001 | |
| Phylogeny | Reliability of phenotypic tests for identification of Acinetobacter species. | Gerner-Smidt P, Tjernberg I, Ursing J. | J Clin Microbiol | 10.1128/jcm.29.2.277-282.1991 | 1991 | |
| Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features. | Bergogne-Berezin E, Towner KJ. | Clin Microbiol Rev | 10.1128/cmr.9.2.148 | 1996 | ||
| A comprehensive genomic analysis provides insights on the high environmental adaptability of Acinetobacter strains. | Zhao Y, Wei HM, Yuan JL, Xu L, Sun JQ. | Front Microbiol | 10.3389/fmicb.2023.1177951 | 2023 | ||
| Sequence-Specific Electrochemical Genosensor for Rapid Detection of blaOXA-51-like Gene in Acinetobacter baumannii. | Kanapathy S, Obande GA, Chuah C, Shueb RH, Yean CY, Banga Singh KK. | Microorganisms | 10.3390/microorganisms10071413 | 2022 | ||
| Phylogeny | A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates. | Liu XL, Liu SL, Liu M, Kong BH, Liu L, Li YH. | Braz J Microbiol | 10.1590/s1517-83822014000100022 | 2014 | |
| Phylogeny | The impact of horizontal gene transfer on targeting the internal transcribed spacer region (ITS) to identify Acinetobacter junii strains. | Maslunka C, Gurtler V, Seviour RJ | J Appl Microbiol | 10.1111/jam.12800 | 2015 | |
| Phylogeny | Acinetobacter corruptisaponis sp. nov., Isolated from a Spoiled Bath Lotion. | Wang YS, Zhou G, Tao HB, Gao L, Fang BZ, Yang XJ, Peng H, Wen X, Huang XM, Wang J, Li WJ, Shi QS, Xie XB. | Curr Microbiol | 10.1007/s00284-024-03921-4 | 2024 |
| #2925 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6964 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #42155 | ; Curators of the CIP; |
| #44296 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 889 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #120367 | Collection of Institut Pasteur ; Curators of the CIP; CIP 64.5 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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