Micromonospora lutea | Type strain | DSM 45424, CCTCC AA 207012, KCTC 19195, YIM 013, JCM 16959, NBRC 106530

Caption:

Medium 535 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Culture medium composition

What are isolation sources categories?

		Temperature
[Ref.: #16792]	growth	28 °C
[Ref.: #29217]	growth	20-45 °C
[Ref.: #29217]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29217]			optimum	7
[Ref.: #29217]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29217]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %92.09
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.8

[Ref.: #29217]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %94.389

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29217]		NaCl		growth	0-7	%
[Ref.: #29217]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29217]	arabinose ChEBI	+	carbon source
[Ref.: #29217]	fructose ChEBI	+	carbon source
[Ref.: #29217]	galactose ChEBI	+	carbon source
[Ref.: #29217]	glucose ChEBI	+	carbon source
[Ref.: #29217]	glycerol ChEBI	+	carbon source
[Ref.: #29217]	lactose ChEBI	+	carbon source
[Ref.: #29217]	maltose ChEBI	+	carbon source
[Ref.: #29217]	melibiose ChEBI	+	carbon source
[Ref.: #29217]	nitrate ChEBI	+	reduction
[Ref.: #29217]	ribose ChEBI	+	carbon source
[Ref.: #29217]	sucrose ChEBI	+	carbon source
[Ref.: #29217]	trehalose ChEBI	+	carbon source
[Ref.: #29217]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29217]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16792]	Sample type/isolated from	mangrove sediment
[Ref.: #16792]	Geographic location (country and/or sea, region)	Guangdong Province
[Ref.: #16792]	Country	China
[Ref.: #16792]	Country ISO 3 Code	CHN
[Ref.: #16792]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from Shenzhen Futian Mangrove and Birds Nature Reserve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Guangdong Province, southern China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil sample
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16792]	Verrucosispora lutea strain YIM 013 16S ribosomal RNA gene, partial sequence	EF191199	1418	GenBank ENA	419825 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora lutea NBRC 106530	GCA_016863535	contig	GenBank ENA	419825 tax ID	*
[Ref.: #66792]	Micromonospora lutea strain NBRC 106530	419825.3	wgs	PATRIC	419825 tax ID	*

[Ref.: #16792]	GC-content	69.3 mol%
[Ref.: #67770]	GC-content	69.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora lutea strain NBRC 106530 PATRIC: 419825.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.581	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.319	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	94.389	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	92.09	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	91.427	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora lutea NBRC 106530 NCBI: GCA_016863535
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	85.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	90.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.8

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