Name: Micromonospora gifhornensis 1-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8029

Type strain:

Species: Micromonospora gifhornensis

Strain Designation: 1-2

Culture col. no.: DSM 44337, BCC 49510, IFO 16317, JCM 10457, NBRC 16317, CGMCC 4.5502, IMSNU 22178, KACC 20946

Strain history: DSM 44337 <-- H. Rheims HR1-2.

NCBI tax ID(s): 84594 (species)

SI-ID 50577

DSM 44337, IFO 16317, JCM 10457, NBRC 16317

Special Collections

DSMZ
JCM

Other strains from Micromonospora gifhornensis

Section

Micromonospora gifhornensis 1-2 is a spore-forming, Gram-positive bacterium that was isolated from peat sample.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora gifhornensis**
	Full Scientific Name (LPSN)	Micromonospora gifhornensis (Rheims et al. 1998) Nouioui et al. 2018

Synonym

Verrucosispora gifhornensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.59

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11683]			growth	37 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.994

[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.937
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-10(H₄), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11683]	Sample type/isolated from	peat sample
[Ref.: #11683]	Geographic location (country and/or sea, region)	Gifhorn, Großes Moor
[Ref.: #11683]	Country	Germany
[Ref.: #11683]	Country ISO 3 Code	DEU
[Ref.: #11683]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Peat from a peat bog near Gifhorn
[Ref.: #67770]	Geographic location (country and/or sea, region)	Lower Saxony
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Wetland (Swamp)

What are isolation sources categories?

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Global distribution of 16S sequence Y15523 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Verrucosispora gifhornensis DSM 44337 16S-23S ribosomal RNA intergenic spacer	AY371892	361	GenBank ENA	84594 tax ID	*
[Ref.: #20218]	Verrucosispora gifhornensis 16S rRNA gene	Y15523	1462	GenBank ENA	84594 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora gifhornensis NBRC 16317	GCA_016863515	contig	GenBank ENA	84594 tax ID	*
[Ref.: #66792]	Micromonospora gifhornensis strain NBRC 16317	84594.3	wgs	PATRIC	84594 tax ID	*

[Ref.: #11683]	GC-content	70.4 mol%
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora gifhornensis strain NBRC 16317 PATRIC: 84594.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora gifhornensis strain NBRC 16317 PATRIC: 84594.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.59	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.801	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.994	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.937	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.805	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

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Culture collection no.

DSM 44337, BCC 49510, IFO 16317, JCM 10457, NBRC 16317, CGMCC 4.5502, IMSNU 22178, KACC 20946

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SI-ID 50577

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora craniellae sp. nov., isolated from a marine sponge, and reclassification of Jishengella endophytica as Micromonospora endophytica comb. nov.	Li L, Zhu HR, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003209	2019	*
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013	*
Phylogeny	Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins.	Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J	Antonie Van Leeuwenhoek	10.1007/s10482-012-9831-y	2012	*
Phylogeny	Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins.	Goodfellow M, Stach JE, Brown R, Bonda AN, Jones AL, Mexson J, Fiedler HP, Zucchi TD, Bull AT	Antonie Van Leeuwenhoek	10.1007/s10482-011-9651-5	2011	*
Phylogeny	Verrucosispora lutea sp. nov., isolated from a mangrove sediment sample.	Liao ZL, Tang SK, Guo L, Zhang YQ, Tian XP, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.008813-0	2009	*
Phylogeny	Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae.	Rheims H, Schumann P, Rohde M, Stackebrandt E	Int J Syst Bacteriol	10.1099/00207713-48-4-1119	1998	*

References

#11683

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44337

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77459

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50577.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora gifhornensis strain NBRC 16317

Micromonospora gifhornensis strain NBRC 16317

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