Micromonospora gifhornensis (DSM 44337, BCC 49510, IFO 16317)

Name: Micromonospora gifhornensis (DSM 44337, BCC 49510, IFO 16317)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8029

Type strain

Strain Designation 1-2

Culture col. no. DSM 44337 BCC 49510 IFO 16317 JCM 10457 NBRC 16317 4 more

NCBI tax ID(s) 84594

Special Collections DSMZ JCM

History DSMZ <- H. Rheims, 1-2 JCM <-- DSM 44337 <-- H. Rheims HR1-2.

Links

Micromonospora gifhornensis 1-2 is a bacterium that was isolated from peat sample.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50577

DSM 44337,IFO 16317,JCM 10457,NBRC 16317

@ref 20215

Last LPSN update 2026-05-29 08:26:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora gifhornensis

Full scientific name Micromonospora gifhornensis (Rheims et al. 1998) Nouioui et al. 2018

Synonyms (1)

Verrucosispora gifhornensis

BacDive ID	Other strains from **Micromonospora gifhornensis** (1)	Type strain
160488	M. gifhornensis 4/2/0.25/11, DSM 43701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.59
125439		95.214
125439	positive	99.641

Multimedia

@ref:	11683
multimedia content:	DSM_44337.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44337.jpg
caption:	Medium 65 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11683	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11683	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
11683	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11683	positive	growth	37
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.994
125439	obligate aerobe	99.807

Spore formation

@ref	Spore formation	Confidence
125438		90.937
125439		92.64

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-10(H₄), MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11683	peat sample	Gifhorn, Großes Moor	Germany	DEU	Europe
67770	Peat from a peat bog near Gifhorn	Lower Saxony	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence Y15523 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11683	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686351v1 assembly for Micromonospora gifhornensis NBRC 16317	contig	GCA_016863515	84594.3	8065305399	84594	51.83
124043	ASM3952489v1 assembly for Micromonospora gifhornensis JCM 10457	scaffold	GCA_039524895			84594	38.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Verrucosispora gifhornensis DSM 44337 16S-23S ribosomal RNA intergenic spacer	AY371892	361		84594
20218	Verrucosispora gifhornensis 16S rRNA gene	Y15523	1462		84594

GC content

@ref	GC-content (mol%)	Method
11683	70.4
67770	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686351v1 assembly for Micromonospora gifhornensis NBRC 16317
NCBI: GCA_016863515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.81	no
125439	gram_stain	BacteriaNetⓘ	positive	99.64	no
125439	motility	BacteriaNetⓘ	no	95.21	no
125439	spore_formation	BacteriaNetⓘ	yes	92.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora gifhornensis strain NBRC 16317
PATRIC: 84594.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.59	no
125438	anaerobic	anaerobicⓘ	no	93.80	no
125438	aerobic	aerobicⓘ	yes	90.99	no
125438	spore-forming	spore-formingⓘ	yes	90.94	no
125438	thermophilic	thermophileⓘ	no	90.81	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Micromonospora craniellae sp. nov., isolated from a marine sponge, and reclassification of Jishengella endophytica as Micromonospora endophytica comb. nov.	Li L, Zhu HR, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003209	2019
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013
Phylogeny	Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins.	Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J	Antonie Van Leeuwenhoek	10.1007/s10482-012-9831-y	2012
Phylogeny	Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins.	Goodfellow M, Stach JE, Brown R, Bonda AN, Jones AL, Mexson J, Fiedler HP, Zucchi TD, Bull AT	Antonie Van Leeuwenhoek	10.1007/s10482-011-9651-5	2011
Phylogeny	Verrucosispora lutea sp. nov., isolated from a mangrove sediment sample.	Liao ZL, Tang SK, Guo L, Zhang YQ, Tian XP, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.008813-0	2009
Phylogeny	Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae.	Rheims H, Schumann P, Rohde M, Stackebrandt E	Int J Syst Bacteriol	10.1099/00207713-48-4-1119	1998

References

#11683	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44337
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora gifhornensis (DSM 44337, BCC 49510, IFO 16317)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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