Micromonospora chokoriensis (DSM 45160, JCM 13247, MTCC 8535)

Name: Micromonospora chokoriensis (DSM 45160, JCM 13247, MTCC 8535)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8006

Type strain

Strain Designation 2-19(6)

Culture col. no. DSM 45160 JCM 13247 MTCC 8535 NBRC 106572 2-19(6) 2 more

NCBI tax ID(s) 356851

Special Collections DSMZ JCM

Links

Micromonospora chokoriensis 2-19 is a mesophilic prokaryote that was isolated from sandy soil at a forest-side waterfall.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 309467

DSM 45160,MTCC 8535,JCM 13247

@ref 20215

Last LPSN update 2025-12-16 09:48:43

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora chokoriensis

Full scientific name Micromonospora chokoriensis Ara and Kudo 2007

BacDive ID	Other strains from **Micromonospora chokoriensis** (13)	Type strain
128402	M. chokoriensis STH00144(ZIMET), ST 19997, HKI 0144
128403	M. chokoriensis STH00145(ZIMET), ST 19998, HKI 0145
128404	M. chokoriensis STH00146(ZIMET), ST 19999, HKI 0146
128405	M. chokoriensis STH00149(ZIMET), ST 20005, HKI 0149
128406	M. chokoriensis STH00150(ZIMET), ST 20006, HKI 0150
128407	M. chokoriensis STH00134(ZIMET), ST 20000, HKI 0134
128408	M. chokoriensis STH00135(ZIMET), ST 20001, HKI 0135
128409	M. chokoriensis STH00151(ZIMET), ST 20007, RK7-4, HKI 0151
128410	M. chokoriensis STH00152(ZIMET), RK7-7, ST 20008, HKI 0152
128411	M. chokoriensis STH00147(ZIMET), ST 20003, HKI 0147
128412	M. chokoriensis STH00148(ZIMET), ST 20004, HKI 0148
161894	M. chokoriensis JCM 17001
161898	M. chokoriensis JCM 17008

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	93.427
125439	positive	99.8
125439		91.3

Multimedia

@ref:	15462
multimedia content:	DSM_45160-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45160-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	15462
multimedia content:	DSM_45160.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45160.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15462	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15462	BENNETT'S AGAR (DSMZ Medium 548)		Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15462	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.4

Spore formation

@ref	Spore formation	Confidence
125438		94.54

Observation

67770

Observationquinones: MK-10(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15462	sandy soil at a forest-side waterfall	Chokoria	Bangladesh	BGD	Asia
67770	Sandy soil near a waterfall	Chokoria	Bangladesh	BGD	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB241454 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15462	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2623620610 annotated assembly for Micromonospora chokoriensis DSM 45160	chromosome	GCA_900091505	356851.6	2623620610	356851	86.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15462	Micromonospora chokoriensis gene for 16S rRNA, partial sequence	AB241454	1503		356851

GC content

@ref	GC-content (mol%)	Method
15462	71
67770	71	high performance liquid chromatography (HPLC)
67770	71.46	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora chokoriensis DSM 45160
IMG: 2623620610

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	89.40	no
125439	motility	BacteriaNetⓘ	no	91.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora chokoriensis strain DSM 45160
PATRIC: 356851.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.43	no
125438	anaerobic	anaerobicⓘ	no	94.33	no
125438	spore-forming	spore-formingⓘ	yes	94.54	no
125438	aerobic	aerobicⓘ	yes	89.42	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes.	Saha J, Saha BK, Pal Sarkar M, Roy V, Mandal P, Pal A.	Front Microbiol	10.3389/fmicb.2019.02896	2019
Phylogeny	Melissospora conviva gen. nov., sp. nov., a novel actinobacterial genus isolated from beehive through cross-feeding interactions.	Tellatin D, Cornet L, Snauwaert V, Compere P, Ongena M, Quinton L, Stulanovic N, Ribeiro Monteiro S, Rigolet A, Burguet P, Van Damme P, Carro L, Rigali S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006868	2025
Phylogeny	Micromonospora orduensis sp. nov., isolated from deep marine sediment.	Veyisoglu A, Carro L, Cetin D, Igual JM, Klenk HP, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-019-01349-6	2019
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017
Phylogeny	Two new species of the genus Micromonospora: Micromonospora chokoriensis sp. nov. and Micromonospora coxensis sp. nov., isolated from sandy soil.	Ara I, Kudo T	J Gen Appl Microbiol	10.2323/jgam.53.29	2007

References

#15462	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45160
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora chokoriensis (DSM 45160, JCM 13247, MTCC 8535)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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