Name: Micromonospora lupini DSM 44874
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8005

Type strain:

Species: Micromonospora lupini

Culture col. no.: DSM 44874, LMG 24055, NRRL B-24771, Lupac 14N, JCM 16031, NBRC 106141

Strain history: LMG 24055 <-- M. E. Trujillo strain Lupac 14N.

NCBI tax ID(s): 285679 (species)

SI-ID 297448

DSM 44874, LMG 24055, JCM 16031, NBRC 106141

Other strains from Micromonospora lupini

M. lupini DSM 44870, Lupac 08
M. lupini DSM 44873, Lupac 13

Section

Micromonospora lupini DSM 44874 is an aerobe, spore-forming, mesophilic bacterium that was isolated from root nodules of Lupinus angustifolius.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora lupini**
	Full Scientific Name (LPSN)	Micromonospora lupini Trujillo et al. 2007

Synonym

"Micromonospora lupini"

Information on morphological and physiological properties Morphology

[Ref.: #32250]	Gram stain	positive

[Ref.: #20133]	Colony color	Signal orange (2010)
[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 2

[Ref.: #20133]	Colony color	Pastel orange (2003)
[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 3

[Ref.: #20133]	Colony color	Signal orange (2010)
[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 4

[Ref.: #20133]	Colony color	Signal orange (2010)
[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 6

[Ref.: #20133]	Colony color	Signal orange (2010)
[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 7

[Ref.: #20133]	Incubation period	10-14 days
[Ref.: #20133]	Cultivation medium used	ISP 5

[Ref.: #32250]

Pigment production

[Ref.: #20133]	Multicellular complex forming ability	no
[Ref.: #20133]	Medium Name (multicellularity)	ISP 2

[Ref.: #20133]	Multicellular complex forming ability	no
[Ref.: #20133]	Medium Name (multicellularity)	ISP 3

[Ref.: #20133]	Multicellular complex forming ability	no
[Ref.: #20133]	Medium Name (multicellularity)	ISP 4

[Ref.: #20133]	Multicellular complex forming ability	no
[Ref.: #20133]	Medium Name (multicellularity)	ISP 6

[Ref.: #20133]	Multicellular complex forming ability	no
[Ref.: #20133]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12161]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12161]

Culture medium growth

[Ref.: #12161]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12161]

Culture medium composition

expand / minimize

[Ref.: #12161]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12161]

Culture medium growth

[Ref.: #12161]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20133]

Culture medium

ISP 2

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

[Ref.: #20133]

Culture medium

ISP 3

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

[Ref.: #20133]

Culture medium

ISP 4

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

[Ref.: #20133]

Culture medium

ISP 5

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

[Ref.: #20133]

Culture medium

ISP 6

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

[Ref.: #20133]

Culture medium

ISP 7

[Ref.: #20133]

Culture medium growth

[Ref.: #20133]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12161]	growth	28 °C
[Ref.: #20133]	optimum	28 °C
[Ref.: #32250]	growth	20-37 °C
[Ref.: #32250]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12161]	Temperature range	mesophilic
[Ref.: #20133]	Temperature range	mesophilic
[Ref.: #32250]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32250]

Oxygen tolerance

aerobe

[Ref.: #32250]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32250]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32250]	alanine ChEBI	+	carbon source
[Ref.: #20133]	arabinose ChEBI	+
[Ref.: #32250]	cellobiose ChEBI	+	carbon source
[Ref.: #20133]	cellulose ChEBI	-
[Ref.: #32250]	esculin ChEBI	+	hydrolysis
[Ref.: #20133]	fructose ChEBI	+
[Ref.: #32250]	galactose ChEBI	+	carbon source
[Ref.: #20133]	glucose ChEBI	+
[Ref.: #32250]	maltose ChEBI	+	carbon source
[Ref.: #20133]	mannitol ChEBI	-
[Ref.: #32250]	mannitol ChEBI	+	carbon source
[Ref.: #32250]	mannose ChEBI	+	carbon source
[Ref.: #32250]	melibiose ChEBI	+	carbon source
[Ref.: #20133]	myo-inositol ChEBI	-
[Ref.: #20133]	raffinose ChEBI	-
[Ref.: #32250]	raffinose ChEBI	+	carbon source
[Ref.: #20133]	rhamnose ChEBI	-
[Ref.: #20133]	sucrose ChEBI	+
[Ref.: #32250]	sucrose ChEBI	+	carbon source
[Ref.: #32250]	trehalose ChEBI	+	carbon source
[Ref.: #20133]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32250]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32250]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #32250]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32250]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32250]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32250]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #32250]	pyrazinamidase	+	3.5.1.B15
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20133]	914	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12161]	Sample type/isolated from	root nodules of Lupinus angustifolius
[Ref.: #12161]	Host species	Lupinus angustifolius
[Ref.: #12161]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #12161]	Country	Spain
[Ref.: #12161]	Country ISO 3 Code	ESP
[Ref.: #12161]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized nitrogen-fixing nodule of Lupinus angustifolius
[Ref.: #67770]	Host species	Lupinus angustifolius
[Ref.: #67770]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ783996 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12161]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20133]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12161]	Micromonospora lupini partial 16S rRNA gene, type strain Lupac 14NT	AJ783996	1457	ENA	285679 tax ID

[Ref.: #12161]	GC-content	70.9 mol%
[Ref.: #67770]	GC-content	70.9 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #12161]

Culture collection no.

DSM 44874, LMG 24055, NRRL B-24771, Lupac 14N, JCM 16031, NBRC 106141

[Ref.: #77435]

SI-ID 297448

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora orduensis sp. nov., isolated from deep marine sediment.	Veyisoglu A, Carro L, Cetin D, Igual JM, Klenk HP, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-019-01349-6	2019	*
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017	*
Phylogeny	Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.).	Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang W	J Antibiot (Tokyo)	10.1038/ja.2014.54	2014	*
Phylogeny	Micromonospora violae sp. nov., isolated from a root of Viola philippica Car.	Zhang Y, Liu H, Zhang X, Wang S, Liu C, Yu C, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0184-6	2014	*
Phylogeny	Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius.	Trujillo ME, Kroppenstedt RM, Fernandez-Molinero C, Schumann P, Martinez-Molina E	Int J Syst Evol Microbiol	10.1099/ijs.0.65192-0	2007	*

References

#12161

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44874

#20133

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32250

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28491 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77435

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297448.1 )

#28491

IJSEM 2799 2007 ( DOI 10.1099/ijs.0.65192-0 , PubMed 18048727 )

* These data were automatically processed and therefore are not curated

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