Micromonospora sagamiensis (DSM 44886, ATCC 21826, DSM 43912)

Name: Micromonospora sagamiensis (DSM 44886, ATCC 21826, DSM 43912)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7978

Status isotype of 7995

Type strain

Strain Designation MK-65, UC-158

Culture col. no. DSM 44886 ATCC 21826 DSM 43912 JCM 3310 KCC A-0310 4 more

NCBI tax ID(s) 47875

Special Collections DSMZ JCM KCTC

History DSMZ <- J. Wink, Aventis; UC-158 <- ATCC <- Kyowa Ferm. Ind. Co., Ltd.; MK-65

Links

Micromonospora sagamiensis MK-65 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 37745

ATCC 21826,DSM 43912,JCM 3310,NRRL 11334,KCTC 9215,DSM 44886,KACC 20106,CIP 108950,NBRC 101888

@ref 20215

Last LPSN update 2026-05-29 08:26:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora sagamiensis

Full scientific name Micromonospora sagamiensis Kroppenstedt et al. 2005

BacDive ID	Other strains from **Micromonospora sagamiensis** (1)	Type strain
7995	M. sagamiensis MK-65, DSM 43912, ATCC 21826, CIP 108950, ... (type strain)

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		95.95
125439		99.856	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12171	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
12171	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
12171	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12171	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.399

Spore formation

@ref	Spore formation	Confidence
125439		93.737

Compound production

12171

Compoundmicronomicin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
12171	soil	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4242869v1 assembly for Micromonospora sagamiensis JCM 3310	scaffold	GCA_042428695	47875	5.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Micromonospora sagamiensis strain JCM 3310 16S ribosomal RNA gene, partial sequence.	MT760443	1360		47875

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4242869v1 assembly for Micromonospora sagamiensis JCM 3310
NCBI: GCA_042428695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.86	no
125439	motility	BacteriaNetⓘ	no	95.95	no
125439	spore_formation	BacteriaNetⓘ	yes	93.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.	Riesco R, Carro L, Roman-Ponce B, Prieto C, Blom J, Klenk HP, Normand P, Trujillo ME.	Front Microbiol	10.3389/fmicb.2018.01360	2018
Metabolism	Production of antibiotic SU-2 complex by a 2-deoxystreptamine idiotroph of Micromonospora sagamiensis.	Kase H, Kitamura S, Nakayama K.	J Antibiot (Tokyo)	10.7164/antibiotics.35.385	1982
Metabolism	Sagamicin and the related aminoglycosides: fermentation and biosynthesis. III. Isolation and characterization of Micromonospora sagamiensis mutants blocked in gentamicin C1 pathway.	Odakura Y, Kase H, Nakayama K.	J Antibiot (Tokyo)	10.7164/antibiotics.36.125	1983
Metabolism	Multiple-dose pharmacokinetics in serum and sputum of sagamicin administered intramuscularly to patients.	Fraschini F, Scaglione F, Scarpazza G, Marchi M, Braga PC.	Chemotherapy	10.1159/000238479	1987
Metabolism	Sagamicin and the related aminoglycosides: fermentation and biosynthesis. I. Biosynthetic studies with the blocked mutants of Micromonospora sagamiensis.	Kase H, Odakura Y, Nakayama K.	J Antibiot (Tokyo)	10.7164/antibiotics.35.1	1982
Pathogenicity	[Safety evaluation of micronomicin VII. Fertility study by intravenous injection in rats].	Hara T, Fujita T, Takahashi H, Deguchi T.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin VIII. Teratogenicity studies in rabbits after intravenous injection].	Hara T, Fujita T, Takahashi H, Deguchi T.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin IX. Perinatal and postnatal study by intravenous injection in rats].	Hara T, Fujita T, Takahashi H, Deguchi T.	Jpn J Antibiot		1983
Pathogenicity	[Safety evaluation of micronomicin. II. Irritation by repeated intravenous injection in dogs].	Hara T, Nishikawa S, Miyazaki H, Ohguro Y.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin. III. Teratogenicity studies in rats].	Hara T, Nishikawa S, Miyazaki H, Ohguro Y.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin VI. Subacute toxicity in rabbits after drip intravenous infusion].	Hara T, Harada S, Ikenaga T, Yamamoto M, Kashitani J, Deguchi T.	Jpn J Antibiot		1983
Enzymology	Uncovering the potential of novel micromonosporae isolated from an extreme hyper-arid Atacama Desert soil.	Carro L, Castro JF, Razmilic V, Nouioui I, Pan C, Igual JM, Jaspars M, Goodfellow M, Bull AT, Asenjo JA, Klenk HP.	Sci Rep	10.1038/s41598-019-38789-z	2019
	[Safety evaluation of micronomicin IV. Acute toxicity in rats, rabbits and dogs after drip intravenous infusion].	Hara T, Harada S, Ikenaga T, Deguchi T.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin V. Subacute toxicity in rats after intravenous injection].	Hara T, Harada S, Yamamoto M, Kashitani J, Deguchi T.	Jpn J Antibiot		1983
	[Safety evaluation of micronomicin. I. Subacute and chronic toxicity in dogs].	Hara T, Nishikawa S, Miyazaki H, Ohguro Y.	Jpn J Antibiot		1983
Pathogenicity	[Review [new antibiotics series III]: micronomicin (author's transl)].	Ohkoshi M, Okada K, Kawamura N.	Jpn J Antibiot		1982
Metabolism	Synthesis of carbon-14 and tritium labeled sagamicin.	Deguchi T, Okumura S, Ishii A, Tanaka M.	J Antibiot (Tokyo)	10.7164/antibiotics.30.993	1977
Enzymology	The gentamicin antibiotics. 6. Gentamicin C2b, an aminoglycoside antibiotic produced by Micromonospora purpurea mutant JI-33.	Daniels PJ, Luce C, Nagabhushan TL.	J Antibiot (Tokyo)	10.7164/antibiotics.28.35	1975
Phylogeny	Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.	Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Goker M, Goodfellow M.	Sci Rep	10.1038/s41598-017-17392-0	2018
	Cell wall composition of Micromonospora olivoasterospora, Micromonospora sagamiensis, and related organisms.	Kawamoto I, Oka T, Nara T.	J Bacteriol	10.1128/jb.146.2.527-534.1981	1981
Metabolism	Femtosecond laser-based mutagenesis strategy for micronomicin production enhancement of Micromonospora sagamiensis ATCC 21826.	Liu P, Wen J, Chen Y, Jia X	World J Microbiol Biotechnol	10.1007/s11274-013-1261-0	2013
	Taxonomic description of Micromonospora reichwaldensis sp. nov. and its biosynthetic and plant growth-promoting potential.	Nouioui I, Zimmermann A, Gomez Escribano JP, Jando M, Potter G, Neumann-Schaal M, Mast Y.	Microbiol Spectr	10.1128/spectrum.02129-24	2025
Phylogeny	Micromonospora fluostatini sp. nov., isolated from marine sediment.	Phongsopitanun W, Kudo T, Mori M, Shiomi K, Pittayakhajonwut P, Suwanborirux K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000589	2015
Phylogeny	Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov.	Kroppenstedt RM, Mayilraj S, Wink JM, Kallow W, Schumann P, Secondini C, Stackebrandt E	Syst Appl Microbiol	10.1016/j.syapm.2004.12.011	2005

References

#12171	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44886
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora sagamiensis (DSM 44886, ATCC 21826, DSM 43912)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042428695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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