Name: Acidicaldus organivorans Y008
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 79

Type strain:

Species: Acidicaldus organivorans

Strain Designation: Y008

Culture col. no.: DSM 16953

Strain history: <- D. B. Johnson, University of Wales, School of Biological Sciences, Bangor, UK; Y008 (Acidocaldus organivorus) <- D. B. Johnson {2001}

NCBI tax ID(s): 209650 (species)

SI-ID 297110

DSM 16953, ATCC BAA-1105

Section

Acidicaldus organivorans Y008 is a thermophilic bacterium that was isolated from enrichment culture inoculated with a water sample from a Frying Pan thermal spring.

thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidicaldus*
	Species	**Acidicaldus organivorans**
	Full Scientific Name (LPSN)	Acidicaldus organivorans corrig. Johnson et al. 2006

Synonym

Acidicaldus organivorus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6665]

Culture medium

ACIDICALDUS MEDIUM (DSMZ Medium 1038)

[Ref.: #6665]

Culture medium growth

[Ref.: #6665]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6665]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6665]			growth	50 °C

[Ref.: #6665]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6665]	Sample type/isolated from	enrichment culture inoculated with a water sample from a Frying Pan thermal spring
[Ref.: #6665]	Geographic location (country and/or sea, region)	Yellowstone National Park, Gibbon river area
[Ref.: #6665]	Country	USA
[Ref.: #6665]	Country ISO 3 Code	USA
[Ref.: #6665]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY140238 (>99% sequence identity) for Acidicaldus organivorans subclade from Microbeatlas

Aquatic Samples	84
Soil Samples	23
Animal Samples	20
Plant Samples	9
Total Samples	136

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6665]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6665]	Acidicaldus organivorans strain Y008 16S ribosomal RNA gene, partial sequence	AY140238	1340	ENA	209650 tax ID

[Ref.: #6665]

GC-content

71.8 mol%

Availability in culture collections External links

[Ref.: #6665]

Culture collection no.

DSM 16953

[Ref.: #69762]

SI-ID 297110

References

#6665

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16953

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69762

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297110.1 )

* These data were automatically processed and therefore are not curated

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