Strain identifier

BacDive ID: 79

Type strain: Yes

Species: Acidicaldus organivorans

Strain Designation: Y008

Strain history: <- D. B. Johnson, University of Wales, School of Biological Sciences, Bangor, UK; Y008 (Acidocaldus organivorus) <- D. B. Johnson {2001}

NCBI tax ID(s): 209650 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6665

BacDive-ID: 79

DSM-Number: 16953

keywords: 16S sequence, Bacteria

description: Acidicaldus organivorans Y008 is a bacterium that was isolated from enrichment culture inoculated with a water sample from a Frying Pan thermal spring.

NCBI tax id

  • NCBI tax id: 209650
  • Matching level: species

strain history

  • @ref: 6665
  • history: <- D. B. Johnson, University of Wales, School of Biological Sciences, Bangor, UK; Y008 (Acidocaldus organivorus) <- D. B. Johnson {2001}

doi: 10.13145/bacdive79.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acidicaldus
  • species: Acidicaldus organivorans
  • full scientific name: Acidicaldus organivorans corrig. Johnson et al. 2006
  • synonyms

    • @ref: 20215
    • synonym: Acidicaldus organivorus

@ref: 6665

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acidicaldus

species: Acidicaldus organivorans

full scientific name: Acidicaldus organivorans Johnson et al. 2006

strain designation: Y008

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6665
  • name: ACIDICALDUS MEDIUM (DSMZ Medium 1038)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1038
  • composition: Name: ACIDICALDUS MEDIUM (DSMZ Medium 1038) Composition: D-Glucose 1.0 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.02 g/l Distilled water

culture temp

  • @ref: 6665
  • growth: positive
  • type: growth
  • temperature: 50

Isolation, sampling and environmental information

isolation

  • @ref: 6665
  • sample type: enrichment culture inoculated with a water sample from a Frying Pan thermal spring
  • geographic location: Yellowstone National Park, Gibbon river area
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_93208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_4018;97_4937;98_6315;99_93208&stattab=map
  • Last taxonomy: Acidicaldus organivorans subclade
  • 16S sequence: AY140238
  • Sequence Identity:
  • Total samples: 136
  • soil counts: 23
  • aquatic counts: 84
  • animal counts: 20
  • plant counts: 9

Safety information

risk assessment

  • @ref: 6665
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6665
  • description: Acidicaldus organivorans strain Y008 16S ribosomal RNA gene, partial sequence
  • accession: AY140238
  • length: 1340
  • database: nuccore
  • NCBI tax ID: 209650

GC content

  • @ref: 6665
  • GC-content: 71.8

External links

@ref: 6665

culture collection no.: DSM 16953

straininfo link

  • @ref: 69762
  • straininfo: 297110

Reference

@idauthorscataloguedoi/urltitle
6665Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16953)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16953
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69762Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297110.1StrainInfo: A central database for resolving microbial strain identifiers