Strain identifier
BacDive ID: 79
Type strain: 
Species: Acidicaldus organivorans
Strain Designation: Y008
Strain history: <- D. B. Johnson, University of Wales, School of Biological Sciences, Bangor, UK; Y008 (Acidocaldus organivorus) <- D. B. Johnson {2001}
NCBI tax ID(s): 209650 (species)
General
@ref: 6665
BacDive-ID: 79
DSM-Number: 16953
keywords: 16S sequence, Bacteria, thermophilic
description: Acidicaldus organivorans Y008 is a thermophilic bacterium that was isolated from enrichment culture inoculated with a water sample from a Frying Pan thermal spring.
NCBI tax id
- NCBI tax id: 209650
- Matching level: species
strain history
- @ref: 6665
- history: <- D. B. Johnson, University of Wales, School of Biological Sciences, Bangor, UK; Y008 (Acidocaldus organivorus) <- D. B. Johnson {2001}
doi: 10.13145/bacdive79.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acidicaldus
- species: Acidicaldus organivorans
- full scientific name: Acidicaldus organivorans corrig. Johnson et al. 2006
synonyms
- @ref: 20215
- synonym: Acidicaldus organivorus
@ref: 6665
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acidicaldus
species: Acidicaldus organivorans
full scientific name: Acidicaldus organivorans Johnson et al. 2006
strain designation: Y008
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6665
- name: ACIDICALDUS MEDIUM (DSMZ Medium 1038)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1038
- composition: Name: ACIDICALDUS MEDIUM (DSMZ Medium 1038) Composition: D-Glucose 1.0 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.02 g/l Distilled water
culture temp
- @ref: 6665
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 6665
- sample type: enrichment culture inoculated with a water sample from a Frying Pan thermal spring
- geographic location: Yellowstone National Park, Gibbon river area
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_93208.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_4018;97_4937;98_6315;99_93208&stattab=map
- Last taxonomy: Acidicaldus organivorans subclade
- 16S sequence: AY140238
- Sequence Identity:
- Total samples: 136
- soil counts: 23
- aquatic counts: 84
- animal counts: 20
- plant counts: 9
Safety information
risk assessment
- @ref: 6665
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6665
- description: Acidicaldus organivorans strain Y008 16S ribosomal RNA gene, partial sequence
- accession: AY140238
- length: 1340
- database: ena
- NCBI tax ID: 209650
GC content
- @ref: 6665
- GC-content: 71.8
External links
@ref: 6665
culture collection no.: DSM 16953
straininfo link
- @ref: 69762
- straininfo: 297110
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6665 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16953) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16953 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69762 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297110.1 | StrainInfo: A central database for resolving microbial strain identifiers |