Name: Asanoa siamensis PS7-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7853

Type strain:

Species: Asanoa siamensis

Strain Designation: PS7-2

Culture col. no.: DSM 45793, BCC 41921, NBRC 107932

Strain history: <- C Suriyachadkun, BCC; BCC 41921 <- N. Niemhom

NCBI tax ID(s): 926357 (species)

SI-ID 400444

DSM 45793

Section

Asanoa siamensis PS7-2 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from temperate peat swamp forest soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Asanoa*
	Species	**Asanoa siamensis**
	Full Scientific Name (LPSN)	Asanoa siamensis Niemhom et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30564]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30564]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.204

[Ref.: #30564]

Pigment production

yes

Multimedia content

[Ref.: #18204]

Caption:

Medium 65 28°C

[Ref.: #18204]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18204]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #18204]

Culture medium growth

[Ref.: #18204]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18204]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #18204]

Culture medium growth

[Ref.: #18204]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18204]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #18204]

Culture medium growth

[Ref.: #18204]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18204]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18204]

Culture medium growth

[Ref.: #18204]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18204]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18204]	growth	28 °C
[Ref.: #30564]	growth	25-30 °C
[Ref.: #30564]	optimum	27.5 °C

[Ref.: #18204]	Temperature range	mesophilic
[Ref.: #30564]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30564]			optimum	9
[Ref.: #30564]			growth	06-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30564]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30564]		NaCl		growth	0-2	%
[Ref.: #30564]		NaCl		optimum	1	%

[Ref.: #30564]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30564]	arabinose ChEBI	+	carbon source
[Ref.: #30564]	cellobiose ChEBI	+	carbon source
[Ref.: #30564]	fructose ChEBI	+	carbon source
[Ref.: #30564]	galactose ChEBI	+	carbon source
[Ref.: #30564]	glucose ChEBI	+	carbon source
[Ref.: #30564]	glycerol ChEBI	+	carbon source
[Ref.: #30564]	lactose ChEBI	+	carbon source
[Ref.: #30564]	maltose ChEBI	+	carbon source
[Ref.: #30564]	mannitol ChEBI	+	carbon source
[Ref.: #30564]	mannose ChEBI	+	carbon source
[Ref.: #30564]	melibiose ChEBI	+	carbon source
[Ref.: #30564]	nitrate ChEBI	+	reduction
[Ref.: #30564]	raffinose ChEBI	+	carbon source
[Ref.: #30564]	rhamnose ChEBI	+	carbon source
[Ref.: #30564]	ribose ChEBI	+	carbon source
[Ref.: #30564]	salicin ChEBI	+	carbon source
[Ref.: #30564]	sucrose ChEBI	+	carbon source
[Ref.: #30564]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18204]	Sample type/isolated from	temperate peat swamp forest soil
[Ref.: #18204]	Geographic location (country and/or sea, region)	Phayao Province, Phu-Sang National Park
[Ref.: #18204]	Country	Thailand
[Ref.: #18204]	Country ISO 3 Code	THA
[Ref.: #18204]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18204]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18204]	Asanoa siamensis gene for 16S rRNA, partial sequence	AB597931	1440	ENA	926357 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Asanoa siamensis NBRC 107932	GCA_016862555	contig	GenBank	926357 tax ID	*
[Ref.: #66792]	Asanoa siamensis strain NBRC 107932	926357.3	wgs	PATRIC	926357 tax ID	*

[Ref.: #18204]	GC-content	72.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30564]	GC-content	72.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Asanoa siamensis strain NBRC 107932 PATRIC: 926357.3
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Asanoa siamensis strain NBRC 107932 PATRIC: 926357.3
[Ref.: #69480]	motile	no	91.797	yes
[Ref.: #69480]	flagellated	no	98.166	yes
[Ref.: #69480]	gram-positive	yes	90.077	yes
[Ref.: #69480]	anaerobic	no	98.931	no
[Ref.: #69480]	halophile	no	93.185	yes
[Ref.: #69480]	spore-forming	yes	94.001	yes
[Ref.: #69480]	glucose-util	yes	89.885	yes
[Ref.: #69480]	aerobic	yes	94.009	no
[Ref.: #69480]	thermophile	no	98.686	no
[Ref.: #69480]	glucose-ferment	no	90.631	no

Availability in culture collections External links

[Ref.: #18204]

Culture collection no.

DSM 45793, BCC 41921, NBRC 107932

[Ref.: #77290]

SI-ID 400444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Asanoa siamensis sp. nov., isolated from soil from a temperate peat swamp forest.	Niemhom N, Suriyachadkun C, Tamura T, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.038851-0	2012	*

References

#18204

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45793

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30564

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26895 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77290

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400444.1 )

#26895

IJSEM 66 2013 ( DOI 10.1099/ijs.0.038851-0 , PubMed 22328605 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Asanoa siamensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Asanoa siamensis strain NBRC 107932

Asanoa siamensis strain NBRC 107932

Change proposal

Change proposal