Micrococcus luteus DSM 21948 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from surface-sterilized roots of Polyspora axillaris.
Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Micrococcus |
| Species Micrococcus luteus |
| Full scientific name Micrococcus luteus (Schroeter 1872) Cohn 1872 (Approved Lists 1980) |
| Synonyms (3) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 16064 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 18345 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18345 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18345 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18345 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18345 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18345 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
| 29287 | Spore formationno |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 29287 | NaCl | positive | growth | 0-15 % |
| 67770 | Observationquinones: MK-8(H2), MK-7(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18345 | 22599 ChEBI | arabinose | - | ||
| 18345 | 62968 ChEBI | cellulose | - | ||
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 18345 | 28757 ChEBI | fructose | - | ||
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 18345 | 17234 ChEBI | glucose | + | ||
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 18345 | 29864 ChEBI | mannitol | - | ||
| 29287 | 28053 ChEBI | melibiose | + | carbon source | |
| 18345 | 17268 ChEBI | myo-inositol | - | ||
| 18345 | 16634 ChEBI | raffinose | - | ||
| 18345 | 26546 ChEBI | rhamnose | - | ||
| 18345 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 29287 | 27082 ChEBI | trehalose | + | carbon source | |
| 29287 | 53426 ChEBI | tween 80 | + | carbon source | |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 18345 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 29287 | catalase | + | 1.11.1.6 | |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | + | from API Coryne | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Plants | #Shrub (Scrub) | |
| #Host | #Plants | #Tree | |
| #Host Body-Site | #Plant | #Root (Rhizome) | |
| #Host Body-Site | #Plant | #Sterilized plant part |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 16064 | surface-sterilized roots of Polyspora axillaris | Polyspora axillaris | Yunnan Province | China | CHN | Asia | |
| 62139 | Surface-sterilized Polyspora axillaris roots | Yunnan Province | China | CHN | Asia | ||
| 67770 | Roots of Polyspora axillaris | Polyspora axillaris | Yunnan Province, south-west China | China | CHN | Asia |
Global distribution of 16S sequence FJ214355 (>99% sequence identity) for Micrococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1413888v1 assembly for Micrococcus yunnanensis DSM 21948 | contig | 566027 | 78.89 | ||||
| 124043 | ASM3953658v1 assembly for Micrococcus yunnanensis JCM 16547 | contig | 566027 | 61.41 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 16064 | Micrococcus yunnanensis strain YIM 65004 16S ribosomal RNA gene, partial sequence | FJ214355 | 1426 | 566027 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 96.43 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.73 | no |
| 125439 | motility | BacteriaNetⓘ | no | 88.12 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 41.59 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.79 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.35 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 83.97 | no |
| 125438 | aerobic | aerobicⓘ | yes | 84.83 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 94.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Draft genome sequence data of Micrococcus yunnanesis strain ORF15-23 from rice rhizosphere soil in Thailand. | Chinachanta K, Chaiwan F, Luu DT, Pathom-Aree W. | Data Brief | 10.1016/j.dib.2024.110466 | 2024 | |
| Assessment of microbial activity by CO2 production during heating oil storage. | Surger MJ, Blank LM. | Eng Life Sci | 10.1002/elsc.202100144 | 2022 | ||
| Evaluating microbial contaminations of alternative heating oils. | Surger MJ, Mayer K, Shivaram K, Stibany F, Plum W, Schaffer A, Eiden S, Blank LM. | Eng Life Sci | 10.1002/elsc.202300010 | 2023 | ||
| Genetics | Genome mining identifies Micrococcus yunnanensis strain AZMABM 17 as a potential source of Antioxidant, Anti-Inflammatory, Antidiabetic, and Antiproliferative compounds. | Irawan H, Mustopa AZ, Suryadinata RP, Manguntungi AB, Trinugroho JP, Feraliana, Mustafawi WZ, Agung MUK, Putra ABN, Palupi KD. | Mol Biol Rep | 10.1007/s11033-025-11104-y | 2025 | |
| A novel microbial agent reduces soil paclobutrazol residue, enhances enzyme activities and increases Ophiopogon japonicus production. | Jiang X, Wang H, Huang Y, Jin H, Ding J, Ma L, Zheng L. | PeerJ | 10.7717/peerj.19008 | 2025 | ||
| Natural solution for the remediation of multi-metal contamination: application of natural amino acids, Pseudomonas fluorescens and Micrococcus yunnanensis to increase the phytoremediation efficiency. | Gol-Soltani M, Ghasemi-Fasaei R, Ronaghi A, Zarei M, Zeinali S, Haderlein SB. | Int J Phytoremediation | 10.1080/15226514.2024.2372688 | 2024 | ||
| A novel microbial agent reduces soil paclobutrazol residue, enhances enzyme activities and increases Ophiopogon japonicus production | Jiang X, Wang H, Huang Y, Jin H, Ding J, Ma L, Zheng L. | PeerJ | 2025 | |||
| Screening of heavy metal-resistant rhizobial and non-rhizobial microflora isolated from Trifolium sp. growing in mining areas. | Rahal S, Menaa B, Chekireb D. | Environ Monit Assess | 10.1007/s10661-024-12445-0 | 2024 | ||
| Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. | Majhi K, Let M, Halder U, Chitikineni A, Varshney RK, Bandopadhyay R. | Environ Res | 10.1016/j.envres.2023.115431 | 2023 | ||
| Characterization of Tomato Seed Endophytic Bacteria as Growth Promoters and Potential Biocontrol Agents. | Roy M, Kang B, Yang S, Choi H, Choi K. | Plant Pathol J | 10.5423/ppj.oa.09.2024.0142 | 2024 | ||
| Complete Genome Sequence of Micrococcus yunnanensis TT9, Isolated from a Healthy Volunteer. | Choi Y, Son H, Lee K. | Microbiol Resour Announc | 10.1128/mra.00652-22 | 2022 | ||
| Phylogeny | Isolation, screening and characterization of efficient cellulose-degrading fungal and bacterial strains and preparation of their consortium under in vitro studies. | Roy D, Gunri SK, Pal KK. | 3 Biotech | 10.1007/s13205-024-03974-z | 2024 | |
| Phylogeny | Community-acquired pneumonia caused by Micrococcus antarcticus: a rare case report. | Xu J, Zhang Y, Shi L, Wang H, Zeng M, Lu Z. | BMC Infect Dis | 10.1186/s12879-024-10084-x | 2024 | |
| Draft Genome Sequences of Three Antibiotic-Producing Soil Bacteria, Staphylococcus pasteuri WAM01, Peribacillus butanolivorans WAM04, and Micrococcus yunnanensis WAM06, with Growth-Inhibiting Effects against Commensal Neisseria Strains. | Reilly E, Alfaro JA, Borzelleri AR, Branco EG, Conklin DC, Held ES, Kulee FZ, Kuzma AJ, Langdon N, Lasko AM, Neri ST, Nichols JA, Olawuyi TR, Park E, Rugullies K, Wilkie CD, Krebs LR, Carter D, Hudson AO, Wadsworth CB. | Microbiol Resour Announc | 10.1128/mra.00627-22 | 2022 | ||
| First case report of human infection with Micrococcus yunnanensis identified by 16S rRNA gene sequencing: A case report. | Zhang Y, Jiang Y, Zhan Y, Wang H, Qin T, Lu Z. | Medicine (Baltimore) | 10.1097/md.0000000000032108 | 2022 | ||
| Phylogeny | Reclassification of Micrococcus aloeverae and Micrococcus yunnanensis as later heterotypic synonyms of Micrococcus luteus. | Huang CH, Wang CL, Liou JS, Lee AY, Blom J, Huang L, Watanabe K. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003654 | 2019 | |
| The burden of antimicrobial resistance in biofilm forming Staphylococcus spp. from Vernal Keratoconjunctivitis patients eyes. | Rupa N, Donthineni PR, Basu S, Arunasri K. | Biofilm | 10.1016/j.bioflm.2025.100278 | 2025 | ||
| Metabolism | Enhancement effects of process optimization technique while elucidating the degradation pathways of drugs present in pharmaceutical industry wastewater using Micrococcus yunnanensis. | Sharma K, Kaushik G, Thotakura N, Raza K, Sharma N, Nimesh S. | Chemosphere | 10.1016/j.chemosphere.2019.124689 | 2020 | |
| Phenotypic and safety exploration of indigenous bacterial strains for probiotic applications in aquaculture. | Rwezawula P, Mwanja WW, Raj JRM, Karunasagar I, Bossier P, Vanrompay D. | BMC Microbiol | 10.1186/s12866-025-04157-3 | 2025 | ||
| Combating Fuel Biocontamination: Tailored Antimicrobial Peptides and an Innovative Delivery Strategy. | Das S, Pal U, Saha-Dasgupta T, Leong S. | ACS Appl Bio Mater | 10.1021/acsabm.5c00474 | 2025 | ||
| Enzymology | Effect of milk bactofugation on the counts and diversity of thermoduric bacteria. | Ribeiro-Junior JC, Tamanini R, Alfieri AA, Beloti V. | J Dairy Sci | 10.3168/jds.2020-18591 | 2020 | |
| Presence of viable gram-positive bacteria in blood of patients with inflammatory bowel disease is not affected by treatment. | Davidson S, So Y, Oscarsson E, Hakansson A, Sjoberg K. | Sci Rep | 10.1038/s41598-025-07535-z | 2025 | ||
| Differences of airborne and mural microorganisms in a 1,500-year-old Xu Xianxiu's Tomb, Taiyuan, China. | Liu J, Wu F, Xiang T, Ma W, He D, Zhang Q, Wang W, Duan Y, Tian T, Feng H. | Front Microbiol | 10.3389/fmicb.2023.1253461 | 2023 | ||
| Micrococcus spp. as a promising source for drug discovery: A review. | Tizabi D, Hill RT. | J Ind Microbiol Biotechnol | 10.1093/jimb/kuad017 | 2023 | ||
| Enzymology | 5-alpha reductase inhibition by Epilobioum fleischeri extract modulates facial microbiota structure. | Sfriso R, Claypool J, Roche M, Imfeld D. | Int J Cosmet Sci | 10.1111/ics.12777 | 2022 | |
| Phylogeny | Bacteria from tropical semiarid temporary ponds promote maize growth under hydric stress. | Prudencio de Araujo VLV, Lira Junior MA, Souza Junior VS, de Araujo Filho JC, Cury Fracetto FJ, Andreote FD, de Araujo Pereira AP, Mendes Junior JP, Rego Barros FMD, Monteiro Fracetto GG. | Microbiol Res | 10.1016/j.micres.2020.126564 | 2020 | |
| The change of bacterial community structure helped Salvia miltiorrhiza alleviate the pressure of drought stress | Wang H, Wu C, Li X, Jia H, Yan Z. | Front Plant Sci | 2025 | |||
| Assessment of microbial contamination in laser materials processing laboratories used for prototyping of biomedical devices. | Somorin YM, O'Connor GM. | Access Microbiol | 10.1099/acmi.0.000494.v3 | 2023 | ||
| Phylogeny | Effect of halotolerant rhizobacteria isolated from halophytes on the growth of sugar beet (Beta vulgaris L.) under salt stress. | Zhou N, Zhao S, Tian CY. | FEMS Microbiol Lett | 10.1093/femsle/fnx091 | 2017 | |
| Microbial occurrence and antibiotic resistance in ready-to-go food items. | Cole ML, Singh OV. | J Food Sci Technol | 10.1007/s13197-018-3180-4 | 2018 | ||
| High-frequency devices effect in vitro: promissing approach in the treatment of acne vulgaris? | Frommherz L, Reinholz M, Gurtler A, Stadler PC, Kaemmerer T, French L, Clanner-Engelshofen BM. | An Bras Dermatol | 10.1016/j.abd.2021.09.015 | 2022 | ||
| Microbiological contamination of indoor and outdoor environments in a desert climate. | Almatawah QA, Al-Rashidi MS, Yassin MF, Varghese JS. | Environ Monit Assess | 10.1007/s10661-022-10032-9 | 2022 | ||
| Significance of siderophore-producing cyanobacteria on enhancing iron uptake potentiality of maize plants grown under iron-deficiency. | Brick MB, Hussein MH, Mowafy AM, Hamouda RA, Ayyad AM, Refaay DA. | Microb Cell Fact | 10.1186/s12934-024-02618-4 | 2025 | ||
| Enhancing drought resistance in Dracocephalum moldavica L. through mycorrhizal fungal inoculation and melatonin foliar application. | Asghari B, Hoseinzadeh M, Mafakheri S. | Sci Rep | 10.1038/s41598-025-95127-2 | 2025 | ||
| Phylogeny | Phenotypic and Genotypic Identification of Bacteria Isolated From Traditionally Prepared Dry Starters of the Eastern Himalayas. | Pradhan P, Tamang JP. | Front Microbiol | 10.3389/fmicb.2019.02526 | 2019 | |
| Bioactive potentiality of secondary metabolites from endophytic bacteria against SARS-COV-2: An in-silico approach. | Akter Y, Barua R, Nasir Uddin M, Muhammad Sanaullah AF, Marzan LW. | PLoS One | 10.1371/journal.pone.0269962 | 2022 | ||
| An Assessment of Airborne Bacteria and Fungi in the Female Dormitory Environment: Level, Impact Factors and Dose Rate. | Li Y, Wang X, Cao G, Wang Y, Miao Q, He J. | Int J Environ Res Public Health | 10.3390/ijerph19116642 | 2022 | ||
| Isolation, characterization and chromatography based purification of antibacterial compound isolated from rare endophytic actinomycetes Micrococcus yunnanensis. | Ranjan R, Jadeja V. | J Pharm Anal | 10.1016/j.jpha.2017.05.001 | 2017 | ||
| Inoculating moldavian balm (Dracocephalum moldavica L.) with mycorrhizal fungi and bacteria may mitigate the adverse effects of water stress. | Amini R, Zafarani-Moattar P, Shakiba MR, Hasanfard A. | Sci Rep | 10.1038/s41598-023-43539-3 | 2023 | ||
| Potential of the essential oil from Pimenta pseudocaryophyllus as an antimicrobial agent. | Suzuki EY, Baptista EB, Resende Do Carmo AM, Miranda Chaves MD, Chicourel EL, Barbosa Raposo NR. | Acta Pharm | 10.2478/acph-2014-0024 | 2014 | ||
| Antibacterial Potential of Essential Oils and Silver Nanoparticles against Multidrug-Resistant Staphylococcus pseudintermedius Isolates. | Meroni G, Laterza G, Tsikopoulos A, Tsikopoulos K, Vitalini S, Scaglia B, Iriti M, Bonizzi L, Martino PA, Soggiu A. | Pathogens | 10.3390/pathogens13020156 | 2024 | ||
| High-Throughput Microbial Community Analyses to Establish a Natural Fungal and Bacterial Consortium from Sewage Sludge Enriched with Three Pharmaceutical Compounds. | Ledezma-Villanueva A, Robledo-Mahon T, Gomez-Silvan C, Angeles-De Paz G, Pozo C, Manzanera M, Calvo C, Aranda E. | J Fungi (Basel) | 10.3390/jof8070668 | 2022 | ||
| Durability Improvement of Biocemented Sand by Fiber-Reinforced MICP for Coastal Erosion Protection. | Imran MA, Nakashima K, Evelpidou N, Kawasaki S. | Materials (Basel) | 10.3390/ma15072389 | 2022 | ||
| Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods. | Rego A, Raio F, Martins TP, Ribeiro H, Sousa AGG, Seneca J, Baptista MS, Lee CK, Cary SC, Ramos V, Carvalho MF, Leao PN, Magalhaes C. | Front Microbiol | 10.3389/fmicb.2019.01018 | 2019 | ||
| Effect of Chronic Consumption of Sweeteners on Microbiota and Immunity in the Small Intestine of Young Mice. | Martinez-Carrillo BE, Rosales-Gomez CA, Ramirez-Duran N, Resendiz-Albor AA, Escoto-Herrera JA, Mondragon-Velasquez T, Valdes-Ramos R, Castillo-Cardiel A. | Int J Food Sci | 10.1155/2019/9619020 | 2019 | ||
| Genetics | Whole genomes of deep-sea sponge-associated bacteria exhibit high novel natural product potential. | Hesketh-Best PJ, January GG, Koch MJ, Warburton PJ, Howell KL, Upton M. | FEMS Microbes | 10.1093/femsmc/xtad005 | 2023 | |
| Iron Oxide-Au Magneto-Plasmonic Heterostructures: Advances in Their Eco-Friendly Synthesis. | Miola M, Multari C, Verne E. | Materials (Basel) | 10.3390/ma15197036 | 2022 | ||
| Airborne bacteria in show caves from Southern Spain. | Dominguez-Monino I, Jurado V, Rogerio-Candelera MA, Hermosin B, Saiz-Jimenez C. | Microb Cell | 10.15698/mic2021.10.762 | 2021 | ||
| Characterization and antioxidative activities of rare C(50) carotenoids-sarcinaxanthin, sarcinaxanthin monoglucoside, and sarcinaxanthin diglucoside-obtained from Micrococcus yunnanensis. | Osawa A, Ishii Y, Sasamura N, Morita M, Kasai H, Maoka T, Shindo K. | J Oleo Sci | 10.5650/jos.59.653 | 2010 | ||
| Characterization and manipulation of the bacterial community in the midgut of Ixodes ricinus. | Guizzo MG, Dolezelikova K, Neupane S, Frantova H, Hrbatova A, Pafco B, Fiorotti J, Kopacek P, Zurek L. | Parasit Vectors | 10.1186/s13071-022-05362-z | 2022 | ||
| Pathogenicity | Impacts of ceftriaxone exposure during pregnancy on maternal gut and placental microbiota and its influence on maternal and offspring immunity in mice. | Cheng R, Guo J, Zhang Y, Cheng G, Qian W, Wan C, Li M, Marotta F, Shen X, He F. | Exp Anim | 10.1538/expanim.20-0114 | 2021 | |
| Enzymology | Biodegradation of Microtoxic Phenylpropanoids (Phenylpropanoic Acid and Ibuprofen) by Bacteria and the Relevance for Their Removal from Wastewater Treatment Plants. | Wittich RM, Haidour A, Aguilar-Romero I, de la Torre-Zuniga J, van Dillewijn P. | Genes (Basel) | 10.3390/genes14020442 | 2023 | |
| Development of a free radical scavenging bacterial consortium to mitigate oxidative stress in cnidarians. | Dungan AM, Bulach D, Lin H, van Oppen MJH, Blackall LL. | Microb Biotechnol | 10.1111/1751-7915.13877 | 2021 | ||
| Diversity of Cultivable Midgut Microbiota at Different Stages of the Asian Tiger Mosquito, Aedes albopictus from Tezpur, India. | Yadav KK, Datta S, Naglot A, Bora A, Hmuaka V, Bhagyawant S, Gogoi HK, Veer V, Raju PS. | PLoS One | 10.1371/journal.pone.0167409 | 2016 | ||
| Enzymology | Challenges in microbiological identification of aerobic bacteria isolated from the skin of reptiles. | Brockmann M, Aupperle-Lellbach H, Gentil M, Heusinger A, Muller E, Marschang RE, Pees M. | PLoS One | 10.1371/journal.pone.0240085 | 2020 | |
| Phylogeny | Hydrolytic Exoenzymes Produced by Bacteria Isolated and Identified From the Gastrointestinal Tract of Bombay Duck. | Hossain TJ, Chowdhury SI, Mozumder HA, Chowdhury MNA, Ali F, Rahman N, Dey S. | Front Microbiol | 10.3389/fmicb.2020.02097 | 2020 | |
| The Bristol Sponge Microbiome Collection: A Unique Repository of Deep-Sea Microorganisms and Associated Natural Products. | Williams SE, Stennett HL, Back CR, Tiwari K, Ojeda Gomez J, Challand MR, Hendry KR, Spencer J, Essex-Lopresti AE, Willis CL, Curnow P, Race PR. | Antibiotics (Basel) | 10.3390/antibiotics9080509 | 2020 | ||
| Characterization of the endophytic bacterial community of Bituminaria bituminosa plant grown in vitro and its interaction with the plant extract. | Chiellini C, De Leo M, Longo V, Pieracci Y, Pistelli L. | Front Plant Sci | 10.3389/fpls.2022.1076573 | 2022 | ||
| Biocontrol and plant growth promotion by combined Bacillus spp. inoculation affecting pathogen and AMF communities in the wheat rhizosphere at low salt stress conditions. | Ji C, Chen Z, Kong X, Xin Z, Sun F, Xing J, Li C, Li K, Liang Z, Cao H. | Front Plant Sci | 10.3389/fpls.2022.1043171 | 2022 | ||
| Two antibacterial and PPARalpha/gamma-agonistic unsaturated keto fatty acids from a coral-associated actinomycete of the genus Micrococcus. | Sharma AR, Harunari E, Oku N, Matsuura N, Trianto A, Igarashi Y. | Beilstein J Org Chem | 10.3762/bjoc.16.29 | 2020 | ||
| Discovery, Yield Improvement, and Application in Marine Coatings of Potent Antifouling Compounds Albofungins Targeting Multiple Fouling Organisms. | She W, Ye W, Cheng A, Ye W, Ma C, Wang R, Cheng J, Liu X, Yuan Y, Chik SY, Limlingan Malit JJ, Lu Y, Chen F, Qian PY. | Front Microbiol | 10.3389/fmicb.2022.906345 | 2022 | ||
| Reduction of bioavailability and phytotoxicity effect of cadmium in soil by microbial-induced carbonate precipitation using metabolites of ureolytic bacterium Ochrobactrum sp. POC9. | Zakrzewska M, Rzepa G, Musialowski M, Goszcz A, Stasiuk R, Debiec-Andrzejewska K. | Front Plant Sci | 10.3389/fpls.2023.1109467 | 2023 | ||
| The Influence of the Addition of Plant-Based Natural Fibers (Jute) on Biocemented Sand Using MICP Method. | Imran MA, Gowthaman S, Nakashima K, Kawasaki S. | Materials (Basel) | 10.3390/ma13184198 | 2020 | ||
| Biosynthesis of Metal and Metal Oxide Nanoparticles Using Microbial Cultures: Mechanisms, Antimicrobial Activity and Applications to Cultural Heritage. | Carrapico A, Martins MR, Caldeira AT, Mirao J, Dias L. | Microorganisms | 10.3390/microorganisms11020378 | 2023 | ||
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| Microbial Reference Frames Reveal Distinct Shifts in the Skin Microbiota after Cleansing. | Sfriso R, Claypool J. | Microorganisms | 10.3390/microorganisms8111634 | 2020 | ||
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| Multi-Trait Wheat Rhizobacteria from Calcareous Soil with Biocontrol Activity Promote Plant Growth and Mitigate Salinity Stress. | Venieraki A, Chorianopoulou SN, Katinakis P, Bouranis DL. | Microorganisms | 10.3390/microorganisms9081588 | 2021 | ||
| Addition of anaerobic electron acceptors to solid media did not enhance growth of 125 spacecraft bacteria under simulated low-pressure Martian conditions. | Schwendner P, Jobson ME, Schuerger AC. | Sci Rep | 10.1038/s41598-020-75222-2 | 2020 | ||
| Phylogeny | Molecular characterization of midgut microbiota of Aedes albopictus and Aedes aegypti from Arunachal Pradesh, India. | Yadav KK, Bora A, Datta S, Chandel K, Gogoi HK, Prasad GB, Veer V. | Parasit Vectors | 10.1186/s13071-015-1252-0 | 2015 | |
| Phylogeny | Bacterial Communities in the Embryo of Maize Landraces: Relation with Susceptibility to Fusarium Ear Rot. | Passera A, Follador A, Morandi S, Miotti N, Ghidoli M, Venturini G, Quaglino F, Brasca M, Casati P, Pilu R, Bulgarelli D. | Microorganisms | 10.3390/microorganisms9112388 | 2021 | |
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| Membrane lipid adaptation of soil Bacteroidetes isolates to temperature and pH. | Hellequin E, Collin S, Seder-Colomina M, Vequaud P, Anquetil C, Kish A, Huguet A. | Front Microbiol | 10.3389/fmicb.2023.1032032 | 2023 | ||
| Role of Arbuscular Mycorrhizal Fungi in Regulating Growth, Enhancing Productivity, and Potentially Influencing Ecosystems under Abiotic and Biotic Stresses. | Wahab A, Muhammad M, Munir A, Abdi G, Zaman W, Ayaz A, Khizar C, Reddy SPP. | Plants (Basel) | 10.3390/plants12173102 | 2023 | ||
| Competitive advantage of oral streptococci for colonization of the middle ear mucosa. | Jacob KM, Reguera G. | Biofilm | 10.1016/j.bioflm.2022.100067 | 2022 | ||
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| Phylogeny | Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea. | Yamamoto K, Shiwa Y, Ishige T, Sakamoto H, Tanaka K, Uchino M, Tanaka N, Oguri S, Saitoh H, Tsushima S. | Front Microbiol | 10.3389/fmicb.2018.02878 | 2018 | |
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| The environmental risk assessment of cell-processing facilities for cell therapy in a Japanese academic institution. | Mizuno M, Endo K, Katano H, Tsuji A, Kojima N, Watanabe K, Shimizu N, Morio T, Sekiya I. | PLoS One | 10.1371/journal.pone.0236600 | 2020 | ||
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| Phylogeny | Space Station conditions are selective but do not alter microbial characteristics relevant to human health. | Mora M, Wink L, Kogler I, Mahnert A, Rettberg P, Schwendner P, Demets R, Cockell C, Alekhova T, Klingl A, Krause R, Zolotariof A, Alexandrova A, Moissl-Eichinger C. | Nat Commun | 10.1038/s41467-019-11682-z | 2019 | |
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| Pathogenicity | Antibacterial Activities of Bacteria Isolated from the Marine Sponges Isodictya compressa and Higginsia bidentifera Collected from Algoa Bay, South Africa. | Matobole RM, van Zyl LJ, Parker-Nance S, Davies-Coleman MT, Trindade M. | Mar Drugs | 10.3390/md15020047 | 2017 | |
| Assessing the Risk of Transfer of Microorganisms at the International Space Station Due to Cargo Delivery by Commercial Resupply Vehicles. | Mhatre S, Wood JM, Sielaff AC, Mora M, Duller S, Singh NK, Karouia F, Moissl-Eichinger C, Venkateswaran K. | Front Microbiol | 10.3389/fmicb.2020.566412 | 2020 | ||
| Food Grade Pimenta Leaf Essential Oil Reduces the Attachment of Salmonella enterica Heidelberg (2011 Ground Turkey Outbreak Isolate) on to Turkey Skin. | Nair DVT, Kollanoor Johny A. | Front Microbiol | 10.3389/fmicb.2017.02328 | 2017 | ||
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| Enzymology | Resilient microorganisms in dust samples of the International Space Station-survival of the adaptation specialists. | Mora M, Perras A, Alekhova TA, Wink L, Krause R, Aleksandrova A, Novozhilova T, Moissl-Eichinger C. | Microbiome | 10.1186/s40168-016-0217-7 | 2016 | |
| Biotechnology | Optimization of Nutrients and Culture Conditions for Alkaline Protease Production Using Two Endophytic Micrococci: Micrococcus aloeverae and Micrococcus yunnanensis. | Prakash O, Nimonkar Y, Chavadar MS, Bharti N, Pawar S, Sharma A, Shouche YS | Indian J Microbiol | 10.1007/s12088-017-0638-4 | 2017 | |
| Genetics | Discovery of Phloeophagus Beetles as a Source of Pseudomonas Strains That Produce Potentially New Bioactive Substances and Description of Pseudomonas bohemica sp. nov. | Saati-Santamaria Z, Lopez-Mondejar R, Jimenez-Gomez A, Diez-Mendez A, Vetrovsky T, Igual JM, Velazquez E, Kolarik M, Rivas R, Garcia-Fraile P. | Front Microbiol | 10.3389/fmicb.2018.00913 | 2018 | |
| Phylogeny | Description of Micrococcus aloeverae sp. nov., an endophytic actinobacterium isolated from Aloe vera. | Prakash O, Nimonkar Y, Munot H, Sharma A, Vemuluri VR, Chavadar MS, Shouche YS | Int J Syst Evol Microbiol | 10.1099/ijs.0.063339-0 | 2014 | |
| Phylogeny | Micrococcus yunnanensis sp. nov., a novel actinobacterium isolated from surface-sterilized Polyspora axillaris roots. | Zhao GZ, Li J, Qin S, Zhang YQ, Zhu WY, Jiang CL, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.010256-0 | 2009 | |
| Phylogeny | Micrococcus porci sp. nov., Isolated from Feces of Black Pig (Sus scrofa). | Lee AY, Chen CH, Liou JS, Lin YC, Hamada M, Wang YT, Peng LL, Chang SC, Chen CC, Lin CF, Huang L, Huang CH | Life (Basel) | 10.3390/life12111749 | 2022 |
| #16064 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21948 |
| #18345 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #25703 | IJSEM 2383 2009 ( DOI 10.1099/ijs.0.010256-0 , PubMed 19620366 ) |
| #29287 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25703 |
| #62139 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59864 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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