Kocuria rhizophila (DSM 348, ATCC 9341, PCI 1001)

Name: Kocuria rhizophila (DSM 348, ATCC 9341, PCI 1001)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7646

Type strain

Culture col. no. DSM 348 ATCC 9341 PCI 1001 NCTC 8340 NCIMB 8553 18 more

NCBI tax ID(s) 378753 72000

Special Collections DSMZ JCM CIP JMRC

History DSMZ <- ATCC <- FDA, PCI 1001 (Sarcina lutea) JCM <-- IAM 1099 <-- NIHJ <-- ATCC 9341 <-- FDA strain PCI 1001 ("Sarcina lutea") <-- E. R. Squibb & Sons. CIP <- 1953, Y.A. Chabbert, Inst. Pasteur, Paris, France, Micrococcus luteus <- F.D.A USA: strain PCI 1001, Sarcina lutea <- E.R. Squibb & Sons

Links

Kocuria rhizophila DSM 348 is an obligate aerobe, Gram-positive, coccus-shaped bacterium that was isolated from Soil.

Gram-positive coccus-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10565

LMG 8194,ATCC 9341,CCM 552,CCUG 12,CECT 241,IAM 1099,IFO 12708,IMET 10397,LMG 8764,LMG 8789,LMG 8816,NCDO 758,NCIB 8553,NCTC 8340,CCUG 10782,NCIMB 8553,CNCTC 5039,IFO 3232,CIP 53.45,CCRC 10449,NCFB 758,KCTC 1071,KCTC 1915,NCDO 7583,KCTC 3523,CCUG 42340,NBRC 12708,NBRC 3232,BCRC 10449,CCT 2562,NBIMCC 159,VKM Ac-2214,CCUG 1622,VTT E-91474,NCAIM B.01746,NCIM 2103,CDBB 998,ACM 2644,ACM 2998,NRRL B-1018,JCM 20050,NBRC 103217,DSM 348

@ref 20215

Last LPSN update 2026-05-29 08:26:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Kocuria

Species Kocuria rhizophila

Full scientific name Kocuria rhizophila Kovács et al. 1999

BacDive ID	Other strains from **Kocuria rhizophila** (13)	Type strain
7647	K. rhizophila TA68, DSM 11926, CCM 4950, IFO 16319, NBRC ... (type strain)
7648	K. rhizophila DSM 46222, ATCC 9341a, IMET 10748, NCIB 9660, ...
7649	K. rhizophila ES-145, DSM 30763
130424	K. rhizophila G2, DSM 31022
134482	K. rhizophila CIP 106519, ATCC 15957, CCRC 11055, CCTM ...
154534	K. rhizophila CCUG 54274
157393	K. rhizophila IMI 501153
159387	K. rhizophila T_C4, DSM 110319
159388	K. rhizophila T_C5, DSM 110320
159389	K. rhizophila T_C7, DSM 110322
159390	K. rhizophila S23/2, DSM 110885
159391	K. rhizophila TO-T1, DSM 110960
169443	K. rhizophila TURIN101221_C9b1, DSM 113549

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122203	positive	coccus-shaped
125438			94.5
125438	positive		93.025

Colony morphology

122203

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
141	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36878	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122203	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
141	positive	growth	30
36878	positive	growth	30
67770	positive	growth	28
122203	positive	growth	15-41
122203	negative	growth	10
122203	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122203	obligate aerobe
125439	facultative anaerobe	97.019

Antibiotic susceptibility testing

	Test 1	Test 2	Test 3	Test 4
@ref	141	141	141	141
Medium	Mueller-Hinton Agar	Mueller-Hinton Agar	Mueller-Hinton Agar	Mueller-Hinton Agar
Manual annotation	1	1	1	1
	Inhibition zone diameter in mm	Inhibition zone diameter in mm	Inhibition zone diameter in mm	Inhibition zone diameter in mm
Amikacin 30µg (disc)	26	30	32	32
Ampicillin 10µg (disc)	>50	>50	>50	>50
Aztreonam 30µg (disc)	24-26	24	22	22
Bacitracin 10Unit	42	38	38	38
Cefalotin 30µg (disc)	>50	50	>50	>50
Cefazolin 30µg (disc)	44	40	48	48
Cefotaxime 30µg (disc)	>50	>50	>50	>50
Ceftriaxone 30µg (disc)	>50	n.d.	50	50
Chloramphenicol 30µg (disc)	46-48	42	46	46
Clindamycin 10µg (disc)	>50	n.d.	50	50
Colistin 10µg (disc)	6	0	8	8
Doxycycline 30µg (disc)	44	40-42	42-44	42-44
Erythromycin 15µg (disc)	>50	44-46	48	48
Fosfomycin 50µg (disc)	>50	n.d.	>50	>50
Gentamicin 10µg (disc)	26	28	30	30
Imipenem 10µg (disc)	>50	>50	>50	>50
Kanamycin 30µg (disc)	20	24	24	24
Lincomycin 15µg (disc)	50	40	44	44
Linezolid 10µg (disc)	48	n.d.	48	48
Mezlocillin 30µg (disc)	>50	>50	>50	>50
Moxifloxacin 5µg (disc)	34	n.d.	32	32
Neomycin 30µg (disc)	26	28	30	30
Nitrofurantoin 100µg (disc)	6	10	10-12	10-12
Norfloxacin 10µg (disc)	14-16	20	22	22
Nystatin 100Unit	0	n.d.	0	0
Ofloxacin 5µg (disc)	26	24-26	26	26
Oxacillin 5µg (disc)	>50	>50	>50	>50
Penicillin G 6µg (disc)	>50	>50	>50	>50
Pipemidic acid 20µg (disc)	6	18-20	22	22
Piperacillin/Tazobactam 40µg (disc)	>50	n.d.	>50	>50
Polymyxin B 300Unit	8	12	10	10
Quinupristin/Dalfopristin 15µg (disc)	48	n.d.	44-46	44-46
Teicoplanin 30µg (disc)	24-26	n.d.	24	24
Tetracycline 30µg (disc)	44-46	40	42	42
Ticarcillin 75µg (disc)	>50	>50	>50	>50
Vancomycin 30µg (disc)	30	30	28	28

Spore formation

@ref	Spore formation	Confidence
125439		94.515

Compound production

@ref	Compound
141	L sorbosone
141	6 aminopenicillanic acid
20216	L-sorbosone

Murein

@ref	Murein short key	Type
141	A11.06	A3alpha L-Lys-L-Ala₃

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122203	606565 ChEBI	hippurate	+	hydrolysis
122203	17632 ChEBI	nitrate	-	reduction
122203	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
141	7660	Nystatin		100 Unit	from Antibiotic test

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122203	35581 ChEBI	indole
67770		L-sorbosone

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122203	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
122203	alcohol dehydrogenase	-	1.1.1.1
122203	amylase	-
122203	beta-galactosidase	-	3.2.1.23
122203	caseinase	+	3.4.21.50
122203	catalase	+	1.11.1.6
122203	DNase	-
122203	gamma-glutamyltransferase	+	2.3.2.2
122203	gelatinase	+/-
122203	lecithinase	-
122203	lipase	-
122203	lysine decarboxylase	-	4.1.1.18
122203	ornithine decarboxylase	-	4.1.1.17
122203	oxidase	-
122203	protease	-
122203	tryptophan deaminase	-
122203	tween esterase	-
122203	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gallate degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	allantoin degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	phenylalanine metabolism	84.62	11 of 13
66794	pentose phosphate pathway	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	lactate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	pyrimidine metabolism	73.33	33 of 45
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	phenol degradation	70	14 of 20
66794	vitamin B1 metabolism	69.23	9 of 13
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	sphingosine metabolism	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	lipid metabolism	64.52	20 of 31
66794	gluconeogenesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	oxidative phosphorylation	57.14	52 of 91
66794	non-pathway related	55.26	21 of 38
66794	lysine metabolism	54.76	23 of 42
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	androgen and estrogen metabolism	50	8 of 16
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	cholesterol biosynthesis	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	d-xylose degradation	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	tyrosine metabolism	35.71	5 of 14
66794	degradation of pentoses	35.71	10 of 28
66794	polyamine pathway	34.78	8 of 23
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	coenzyme M biosynthesis	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	carotenoid biosynthesis	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	phenylpropanoid biosynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation

@ref	Sample type
67770	Soil
122203	Environment, Soil

Taxonmaps

69479

Global distribution of 16S sequence AF542072 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	275
Soil Samples	69
Animal Samples	1797
Plant Samples	67
Total Samples	2208

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
141	1	Risk group (German classification) According to TRBA 466
122203	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1028v1 assembly for Kocuria rhizophila DC2201 DC2201 (= NBRC 103217)	complete	GCA_000010285	378753.5	642555133	378753	99.3
66792	52654_C01 assembly for Kocuria rhizophila NCTC8340	complete	GCA_900637835	72000.33		72000	98.94
124043	ASM4037222v1 assembly for Kocuria rhizophila NBRC 12708	contig	GCA_040372225			72000	75.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Kocuria rhizophila 16S ribosomal RNA gene, partial sequence	AF542072	1334		378753
124043	Kocuria rhizophila DC2201 16S ribosomal RNA gene, partial sequence.	KM460939	1453		378753

GC content

67770

GC-content (mol%)70.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1028v1 assembly for Kocuria rhizophila DC2201 DC2201 (= NBRC 103217)
BV-BRC: 378753.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.02	no
125439	gram_stain	BacteriaNetⓘ	positive	89.11	no
125439	motility	BacteriaNetⓘ	no	71.16	no
125439	spore_formation	BacteriaNetⓘ	no	94.52	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kocuria rhizophila DC2201 DC2201 (= NBRC 103217)
NCBI: GCA_000010285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.03	no
125438	anaerobic	anaerobicⓘ	no	98.00	yes
125438	aerobic	aerobicⓘ	yes	87.21	yes
125438	spore-forming	spore-formingⓘ	no	76.83	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	The Kocurious case of Noodlococcus: genomic insights into Kocuria rhizophila from characterisation of a laboratory contaminant.	McCallum GE, Ho SFS, Cummins EA, Wildsmith AJ, McInnes RS, Weigel C, Tong LYS, Quick J, van Schaik W, Moran RA.	Microb Genom	10.1099/mgen.0.001526	2025
	flowEMMi: an automated model-based clustering tool for microbial cytometric data.	Ludwig J, Zu Siederdissen CH, Liu Z, Stadler PF, Muller S.	BMC Bioinformatics	10.1186/s12859-019-3152-3	2019
	Development of an Automated Online Flow Cytometry Method to Quantify Cell Density and Fingerprint Bacterial Communities.	Lopez-Galvez J, Schiessl K, Besmer MD, Bruckmann C, Harms H, Muller S.	Cells	10.3390/cells12121559	2023
	Heterologous Production and Biosynthesis of Threonine-16:0dioic acids with a Hydroxamate Moiety.	Stierhof M, Myronovskyi M, Zapp J, Luzhetskyy A.	J Nat Prod	10.1021/acs.jnatprod.3c00097	2023
	Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2.	Bruckmann C, Muller S, Honer Zu Siederdissen C.	Comput Struct Biotechnol J	10.1016/j.csbj.2022.11.033	2022
	Quantitative Assessment of Antimicrobial Activity of PLGA Films Loaded with 4-Hexylresorcinol.	Kemme M, Heinzel-Wieland R.	J Funct Biomater	10.3390/jfb9010004	2018
Pathogenicity	Synergistic interaction between silver nanoparticles and membrane-permeabilizing antimicrobial peptides.	Ruden S, Hilpert K, Berditsch M, Wadhwani P, Ulrich AS.	Antimicrob Agents Chemother	10.1128/aac.01106-08	2009
Phylogeny	Predicting the Presence and Abundance of Bacterial Taxa in Environmental Communities through Flow Cytometric Fingerprinting.	Heyse J, Schattenberg F, Rubbens P, Muller S, Waegeman W, Boon N, Props R.	mSystems	10.1128/msystems.00551-21	2021
	Overlapping Properties of the Short Membrane-Active Peptide BP100 With (i) Polycationic TAT and (ii) alpha-helical Magainin Family Peptides.	Mink C, Strandberg E, Wadhwani P, Melo MN, Reichert J, Wacker I, Castanho MARB, Ulrich AS.	Front Cell Infect Microbiol	10.3389/fcimb.2021.609542	2021
	Distribution of Antibiotic Resistance Genes in Kocuria Species.	Pleshko EM, Zhurina MV.	Antibiotics (Basel)	10.3390/antibiotics14101041	2025
	Comprehensive Screening of Salinomycin in Feed and Its Residues in Poultry Tissues Using Microbial Inhibition Tests Coupled to Enzyme-Linked Immunosorbent Assay (ELISA).	Spisakova D, Kozarova I, Hricikova S, Marcincak S.	Foods	10.3390/foods13111661	2024
	The Effect of the Supplementation of Humic Substances and Fermented Products in the Feed on the Content of Salinomycin Residues in Poultry Tissues.	Hricikova S, Kozarova I, Korenekova B, Marcincak S.	Foods	10.3390/foods13010068	2023
Cultivation	Improved production of RNA-inhibiting antimicrobial peptide by Bacillus licheniformis MCC 2514 facilitated by a genetic algorithm optimized medium.	Peerzade IJ, Mutturi S, Halami PM.	Bioprocess Biosyst Eng	10.1007/s00449-024-02998-2	2024
	Exploring phytochemical, antioxidant, and antimicrobial properties of Plumeria pudica Jacq. leaves.	Shukla K, Odedra KN, Jadeja BA.	Sci Rep	10.1038/s41598-024-83980-6	2025
	Exploring the Antimicrobial Properties of 99 Natural Flavour and Fragrance Raw Materials against Pathogenic Bacteria: A Comparative Study with Antibiotics.	Bacinska Z, Baberowska K, Surowiak AK, Balcerzak L, Strub DJ.	Plants (Basel)	10.3390/plants12213777	2023
Genetics	Embleporicin: A Novel Class I Lanthipeptide from the Actinobacteria Embleya sp. NF3.	Roblero-Mejia DO, Garcia-Ausencio C, Rodriguez-Sanoja R, Guzman-Chavez F, Sanchez S.	Antibiotics (Basel)	10.3390/antibiotics13121179	2024
	Apoptotic and anti-inflammatory effect of nisin-loaded sodium alginate-gum arabic nanoparticles against colon cancer cells.	Soans SH, Chonche MJ, Sharan K, Srinivasan A, Archer AC.	Int J Biol Macromol	10.1016/j.ijbiomac.2025.141747	2025
	Genome Mining Reveals a Sactipeptide Biosynthetic Cluster in Staphylococcus pseudintermedius.	Elsakhawy OK, Abouelkhair MA.	Vet Sci	10.3390/vetsci12070635	2025
Metabolism	Exploring new natural products by utilizing untapped secondary metabolic pathways in actinomycetes.	Hoshino S.	J Nat Med	10.1007/s11418-025-01903-9	2025
	Analysis of Eremostachys hyoscyamoides essential oil composition and assessing the antibacterial and antioxidant properties of the ethanol extract.	Talebi M, Oskouie AA, Mahboubi A, Khani M, Mojab F.	Heliyon	10.1016/j.heliyon.2024.e38389	2024
Metabolism	Antibacterial Assay in a Screening Project.	Romero F, Fernandez A.	Methods Mol Biol	10.1007/978-1-0716-1358-0_7	2021
	Cobalt(II) and Manganese(II) Complexes of Sodium Monensinate A Bearing Nitrate Co-Ligands.	Petkov N, Boyadzhiev M, Bozhilova N, Dorkov P, Encheva E, Ugrinov A, Pantcheva IN.	Int J Mol Sci	10.3390/ijms252212129	2024
	Diversity and antimicrobial activity of the tropical ant-derived actinomycetes isolated from Thailand.	Tunvongvinis T, Jaitrong W, Samung Y, Tanasupawat S, Phongsopitanun W.	AIMS Microbiol	10.3934/microbiol.2024005	2024
	Crystal Structure and Properties of Thallium(I) Salinomycinate.	Petkov N, Dorkov P, Ugrinov A, Encheva E, Abrashev M, Zasheva D, Daneva T, Pantcheva IN.	Int J Mol Sci	10.3390/ijms26136504	2025
	Bioactive Properties of Selected European Phellinus Species: A Comprehensive Study	Swiderski G, Kalinowska M, Zapora E, Wolkowycki M, Stocki M, Ciszkowicz E, Bocian A, Jaromin M, Tyrka M, Lecka-Szlachta K, Wolejko E, Wydro U, Pawlowska M, Golianek P, Zawadzka M, Ramshaj Q, Girometta C, Karadelev M.	Int J Mol Sci		2025
	Production of Demineralized Antibacterial, Antifungal and Antioxidant Peptides from Bovine Hemoglobin Using an Optimized Multiple-Step System: Electrodialysis with Bipolar Membrane.	Abou-Diab M, Thibodeau J, Fliss I, Dhulster P, Bazinet L, Nedjar N.	Membranes (Basel)	10.3390/membranes12050512	2022
Metabolism	Identification and Characterization of the Two-Component System HK8700-RR8701 of Kocuria rhizophila DC2201.	Chen B, Zou T, Zou L, Ni H, Huang Y, Long ZE.	Protein J	10.1007/s10930-019-09853-4	2019
	Efficacy of Ceftobiprole and Daptomycin at Bone Concentrations Against Methicillin-Resistant Staphylococcus aureus Biofilm: Results of a Dynamic In Vitro PK/PD Model.	Mancheno-Losa M, Melendez-Carmona MA, Lumbreras C, Lora-Tamayo J.	Antibiotics (Basel)	10.3390/antibiotics14040386	2025
	Heteronuclear Complexes of Hg(II) and Zn(II) with Sodium Monensinate as a Ligand.	Pantcheva I, Petkov N, Encheva E, Kolev S, Simova S, Tsanev A, Dorkov P, Ugrinov A.	Molecules	10.3390/molecules29133106	2024
	Production of bacteriocin-like inhibitory substance (BLIS) by Staphylococcus spp. isolates from dogs.	Santos INS, Lilenbaum W, Moreno DSA, Bastos MDCF.	Braz J Microbiol	10.1007/s42770-024-01532-6	2024
	New variochelins from soil-isolated Variovorax sp. H002.	Haedar JR, Yoshimura A, Wakimoto T.	Beilstein J Org Chem	10.3762/bjoc.20.63	2024
	A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001.	Janthanom R, Kikuchi Y, Kanto H, Hirose T, Tahara A, Ishii T, Thamchaipenet A, Inahashi Y.	Beilstein J Org Chem	10.3762/bjoc.20.44	2024
	Qualitative analysis and exploration of anti-inflammatory and antibacterial effects of a Thai traditional medicine formula from Wat Pho beyond its use for COVID-19 treatment.	Perstwong N, Binalee A, Kobtrakul K, Phongsopitanun W, Sanookpan K, Areecheewakul S, Buranasudja V, Vimolmangkang S.	BMC Complement Med Ther	10.1186/s12906-025-04873-3	2025
	Comparison of the Bioactive Properties of Human and Bovine Hemoglobin Hydrolysates Obtained by Enzymatic Hydrolysis: Antimicrobial and Antioxidant Potential of the Active Peptide alpha137-141.	Outman A, Deracinois B, Flahaut C, Diab MA, Dhaouefi J, Gressier B, Eto B, Nedjar N.	Int J Mol Sci	10.3390/ijms241713055	2023
	Identification of Potent Bioassay Guided Terpenoid and Glycoside Root Fractions of Astragalus candolleanus against Clinically Significant Bacterial Strains.	Nagarajan K, Ghai R, Varshney G, Grover P, Genovese C, D'Angeli F, Goel R, Prasad T, Kalaivani M, Teotia AK.	Int J Microbiol	10.1155/2022/4584799	2022
	New Streptomyces-Derived Antibacterial Compounds Targeting Gram-Positive Bacteria: A Systematic Review.	Ait Assou S, El Hassouni M.	ScientificWorldJournal	10.1155/tswj/6659874	2025
	Class II two-peptide lanthipeptide proteases: exploring LicTP for biotechnological applications.	Barbosa JC, Mosker E, Faria R, Sussmuth RD, Mendo S, Caetano T.	Appl Microbiol Biotechnol	10.1007/s00253-023-12388-5	2023
	Comparative in vitro efficacy of antibiotics against the intracellular reservoir of Staphylococcus aureus.	Beadell B, Yamauchi J, Wong-Beringer A.	J Antimicrob Chemother	10.1093/jac/dkae241	2024
	Mycousfurans A and B, Antibacterial Usnic Acid Congeners from the Fungus Mycosphaerella sp., Isolated from a Marine Sediment.	Lee J, Lee J, Kim GJ, Yang I, Wang W, Nam JW, Choi H, Nam SJ, Kang H.	Mar Drugs	10.3390/md17070422	2019
	Antibacterial Properties of Crotoxin from Crotalus durissus terrificus-Insight into the Mechanism of Action.	Nemecz D, Golinska P.	Molecules	10.3390/molecules27227726	2022
	Characterization of two cryptic plasmids from Kocuria palustris IPUFS-1 and construction of novel Escherichia coli-Kocuria shuttle vector for biocatalysis.	Toda H, Koyanagi T, Enomoto T, Itoh N.	J Biosci Bioeng	10.1016/j.jbiosc.2017.03.018	2017
	Antimicrobial Activities of Essential Oils of Different Pinus Species from Bosnia and Herzegovina.	Mirkovic S, Tadic V, Milenkovic MT, Usjak D, Racic G, Bojovic D, Zugic A.	Pharmaceutics	10.3390/pharmaceutics16101331	2024
	N-Containing alpha-Mangostin Analogs via Smiles Rearrangement as the Promising Cytotoxic, Antitrypanosomal, and SARS-CoV-2 Main Protease Inhibitory Agents.	Pyae NYL, Maiuthed A, Phongsopitanun W, Ouengwanarat B, Sukma W, Srimongkolpithak N, Pengon J, Rattanajak R, Kamchonwongpaisan S, Ei ZZ, Chunhacha P, Wilasluck P, Deetanya P, Wangkanont K, Hengphasatporn K, Shigeta Y, Rungrotmongkol T, Chamni S.	Molecules	10.3390/molecules28031104	2023
	Mononuclear Perfluoroalkyl-Heterocyclic Complexes of Pd(II): Synthesis, Structural Characterization and Antimicrobial Activity.	Rubino S, Alduina R, Cancemi P, Girasolo MA, Di Stefano V, Orecchio S, Buscemi S, Pibiri I.	Molecules	10.3390/molecules25194487	2020
	New Antimicrobial Phenyl Alkenoic Acids Isolated from an Oil Palm Rhizosphere-Associated Actinomycete, Streptomyces palmae CMU-AB204^T.	Sujarit K, Mori M, Dobashi K, Shiomi K, Pathom-Aree W, Lumyong S.	Microorganisms	10.3390/microorganisms8030350	2020
	Chemical Composition and Antimicrobial Activity of Essential Oil of Fruits from Vitex agnus-castus L., Growing in Two Regions in Bulgaria.	Zhelev I, Petkova Z, Kostova I, Damyanova S, Stoyanova A, Dimitrova-Dyulgerova I, Antova G, Ercisli S, Assouguem A, Kara M, Almeer R, Sayed AA.	Plants (Basel)	10.3390/plants11070896	2022
	Chemical Composition and Antimicrobial Activity of Laurus nobilis L. Essential Oils from Bulgaria.	Fidan H, Stefanova G, Kostova I, Stankov S, Damyanova S, Stoyanova A, Zheljazkov VD.	Molecules	10.3390/molecules24040804	2019
Genetics	Draft Genome Sequence of Kocuria rhizophila strain TPW45, an Actinobacterium Isolated from Freshwater.	Adrian TG, Tan PW, Chen JW, Yin WF, Chan KG.	J Genomics	10.7150/jgen.15063	2016
Phylogeny	Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons.	Kawai Y, Ozawa N, Fukuda T, Suzuki N, Mikata K.	PLoS One	10.1371/journal.pone.0262912	2022
	Novel Sources of Biodiversity and Biomolecules from Bacteria Isolated from a High Middle Ages Soil Sample in Palermo (Sicily, Italy).	Vassallo A, Modi A, Quagliariello A, Bacci G, Faddetta T, Gallo M, Provenzano A, La Barbera A, Lombardo G, Maggini V, Firenzuoli F, Zaccaroni M, Gallo G, Caramelli D, Aleo Nero C, Baldi F, Fani R, Palumbo Piccionello A, Pucciarelli S, Puglia AM, Sineo L.	Microbiol Spectr	10.1128/spectrum.04374-22	2023
	Lichen-Derived Actinomycetota: Novel Taxa and Bioactive Metabolites.	Yang Q, Song Z, Li X, Hou Y, Xu T, Wu S.	Int J Mol Sci	10.3390/ijms24087341	2023
	Gunacins: Novel Benzo[g]chromene Derivatives from the Fungus Exobasidium sp. and Their Potent Anti-Leishmania and Trypanosoma Activities.	Stodulkova E, Lovas D, Flieger M, Zikova A, Zapal J, Sticha M, Cisarova I, Cerny J, Grobarova V, Slapnickova M, Vomastek T, Klimova Z, Kuzma M, Semerad J, Cajthaml T, Csefalvay E, Cherotich Maritim W, Wennrich A, Stadler M, Jezkova T, Jasica A, Kolarik M.	ACS Omega	10.1021/acsomega.5c01325	2025
	Consistency evaluation between matrix components ratio and microbiological potency of tylosin major components.	Hamidian K, Amini M, Samadi N.	Daru	10.1007/s40199-018-0220-6	2018
	Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes.	Saito S, Indo K, Oku N, Komaki H, Kawasaki M, Igarashi Y.	Beilstein J Org Chem	10.3762/bjoc.17.203	2021
	The secondary metabolites of rare actinomycetes: chemistry and bioactivity.	Ding T, Yang LJ, Zhang WD, Shen YH.	RSC Adv	10.1039/c9ra03579f	2019
	Isolation and characterization of a heavy metal- and antibiotic-tolerant novel bacterial strain from a contaminated culture plate of Chlamydomonas reinhardtii, a green micro-alga.	Mitra M, Nguyen KM, Box TW, Berry TL, Fujita M.	F1000Res	10.12688/f1000research.53779.2	2021
	Screening Methods for Antimicrobial Residues in the Dairy Chain-The Past and the Present.	Navratilova P, Vorlova L, Dluhosova S, Bartakova K, Hanus O, Samkova E.	Antibiotics (Basel)	10.3390/antibiotics13111098	2024
	Bovine Hemoglobin Enzymatic Hydrolysis by a New Eco-Efficient Process-Part II: Production of Bioactive Peptides.	Abou-Diab M, Thibodeau J, Deracinois B, Flahaut C, Fliss I, Dhulster P, Bazinet L, Nedjar N.	Membranes (Basel)	10.3390/membranes10100268	2020
	Customized antimicrobial efficacy tests offer superior evaluation of growth inhibitor efficacy for liquid microbial products.	Gorsuch JP, Jones Z.	Heliyon	10.1016/j.heliyon.2020.e03419	2020
	Potential antimicrobial properties of streptomyces isolated from Sammuk Mountain soil, Chonburi Province, Thailand.	Sripreechasak P, Athipornchai A.	J Adv Pharm Technol Res	10.4103/japtr.japtr_55_19	2019
	Use of nanoparticulate zinc oxide as intracanal medication in endodontics: pH and antimicrobial activity.	Guerreiro-Tanomaru JM, Pereira KF, Nascimento CA, Bernardi MI, Tanomaru-Filho M.	Acta Odontol Latinoam		2013
	Profiling the Effects of Systemic Antibiotics for Acne, Including the Narrow-Spectrum Antibiotic Sarecycline, on the Human Gut Microbiota.	Moura IB, Grada A, Spittal W, Clark E, Ewin D, Altringham J, Fumero E, Wilcox MH, Buckley AM.	Front Microbiol	10.3389/fmicb.2022.901911	2022
	Specificity of Subtilin-Mediated Activation of Histidine Kinase SpaK.	Geiger C, Spiess T, Korn SM, Kotter P, Entian KD.	Appl Environ Microbiol	10.1128/aem.00781-17	2017
	New Theonellapeptolides from Indonesian Marine Sponge Theonella swinhoei as Anti-Austerity Agents.	Haedar JR, Uria AR, Lallo S, Dibwe DF, Wakimoto T.	Mar Drugs	10.3390/md20110661	2022
	Aggregation Behavior, Antibacterial Activity and Biocompatibility of Catanionic Assemblies Based on Amino Acid-Derived Surfactants.	Perez L, Pinazo A, Moran MC, Pons R.	Int J Mol Sci	10.3390/ijms21238912	2020
	Shikinefragalides A-D, new tricyclic macrolides produced by Stachybotryaceae sp. FKI-9632.	Koike R, Watanabe Y, Kato K, Mikasa Y, Shimizu K, Nonaka K, Honsho M, Suga T, Hokari R, Ishiyama A, Asami Y, Iwatsuki M.	J Antibiot (Tokyo)	10.1038/s41429-022-00512-y	2022
Metabolism	Microbial production of aliphatic (S)-epoxyalkanes by using Rhodococcus sp. strain ST-10 styrene monooxygenase expressed in organic-solvent-tolerant Kocuria rhizophila DC2201.	Toda H, Ohuchi T, Imae R, Itoh N.	Appl Environ Microbiol	10.1128/aem.03405-14	2015
Genetics	High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine.	Castro DB, Pereira LB, Silva MV, Silva BP, Palermo BR, Carlos C, Belgini DR, Limache EE, Lacerda GV, Nery MB, Gomes MB, Souza SS, Silva TM, Rodrigues VD, Paulino LC, Vicentini R, Ferraz LF, Ottoboni LM.	Genom Data	10.1016/j.gdata.2015.05.006	2015
	Persistent bloodstream infection with Kocuria rhizophila related to a damaged central catheter.	Moissenet D, Becker K, Merens A, Ferroni A, Dubern B, Vu-Thien H.	J Clin Microbiol	10.1128/jcm.06038-11	2012
	Antimicrobial efficacy and compatibility of solid copper alloys with chemical disinfectants.	Steinhauer K, Meyer S, Pfannebecker J, Teckemeyer K, Ockenfeld K, Weber K, Becker B.	PLoS One	10.1371/journal.pone.0200748	2018
	Vitex Genus as a Source of Antimicrobial Agents.	Islam Z, Caldeira GI, Canica M, Islam N, Silva O.	Plants (Basel)	10.3390/plants13030401	2024
	Challenging old microbiological treasures for natural compound biosynthesis capacity.	Nouioui I, Zimmermann A, Hennrich O, Xia S, Rossler O, Makitrynskyy R, Pablo Gomez-Escribano J, Potter G, Jando M, Doppner M, Wolf J, Neumann-Schaal M, Hughes C, Mast Y.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1255151	2024
	Autoinduction Specificities of the Lantibiotics Subtilin and Nisin.	Spiess T, Korn SM, Kotter P, Entian KD.	Appl Environ Microbiol	10.1128/aem.02392-15	2015
	Identification and enhancing production of a novel macrolide compound in engineered Streptomyces peucetius.	Pham VTT, Nguyen HT, Nguyen CT, Choi YS, Dhakal D, Kim TS, Jung HJ, Yamaguchi T, Sohng JK.	RSC Adv	10.1039/d0ra06099b	2021
	Antibiotic Use Prior to Hospital Presentation Among Individuals With Suspected Enteric Fever in Nepal, Bangladesh, and Pakistan.	Vaidya K, Aiemjoy K, Qamar FN, Saha SK, Tamrakar D, Naga SR, Saha S, Hemlock C, Longley AT, Date K, Bogoch II, Garrett DO, Luby SP, Andrews JR.	Clin Infect Dis	10.1093/cid/ciaa1333	2020
	Prevalence of macrolide-lincosamide-streptogramin resistant lactic acid bacteria isolated from food samples.	Ashwini M, Ray M, Sumana K, Halami PM.	J Food Sci Technol	10.1007/s13197-022-05648-1	2023
Metabolism	Differential regulation of undecylprodigiosin biosynthesis in the yeast-scavenging Streptomyces strain MBK6.	Bikash B, Vilja S, Mitchell L, Keith Y, Mikael I, Mikko MK, Jarmo N.	FEMS Microbiol Lett	10.1093/femsle/fnab044	2021
	Genome Mining of Micromonospora yangpuensis DSM 45577 as a Producer of an Anthraquinone-Fused Enediyne.	Yan X, Chen JJ, Adhikari A, Yang D, Crnovcic I, Wang N, Chang CY, Rader C, Shen B.	Org Lett	10.1021/acs.orglett.7b03120	2017
	Novel pathways in bacteriocin synthesis by lactic acid bacteria with special reference to ethnic fermented foods.	Sharma BR, Halami PM, Tamang JP.	Food Sci Biotechnol	10.1007/s10068-021-00986-w	2022
Metabolism	Citrobacter diversus-derived keratinases and their potential application as detergent-compatible cloth-cleaning agents.	Duffeck CE, de Menezes CLA, Boscolo M, da Silva R, Gomes E, da Silva RR.	Braz J Microbiol	10.1007/s42770-020-00268-3	2020
Metabolism	A Two-Component regulatory system with opposite effects on glycopeptide antibiotic biosynthesis and resistance.	Alduina R, Tocchetti A, Costa S, Ferraro C, Cancemi P, Sosio M, Donadio S.	Sci Rep	10.1038/s41598-020-63257-4	2020
	Bacteriocin activity of various iranian honey-associated bacteria and development of a simple medium for enhanced bacteriocin activity.	Khalili Samani M, Noormohammadi Z, Fazeli MR, Samadi N.	J Environ Health Sci Eng	10.1007/s40201-021-00615-y	2021
Pathogenicity	Comparative plasma exposure and lung distribution of two human use commercial azithromycin formulations assessed in murine model: a preclinical study.	Rivulgo V, Sparo M, Ceci M, Fumuso E, Confalonieri A, Delpech G, Bruni SF.	Biomed Res Int	10.1155/2013/392010	2013
Phylogeny	Kocuria rhizophila adds to the emerging spectrum of micrococcal species involved in human infections.	Becker K, Rutsch F, Uekotter A, Kipp F, Konig J, Marquardt T, Peters G, von Eiff C.	J Clin Microbiol	10.1128/jcm.00823-08	2008
	Synthesis, Crystal Structure, Antibacterial and In Vitro Anticancer Activity of Novel Macroacyclic Schiff Bases and Their Cu (II) Complexes Derived from S-Methyl and S-Benzyl Dithiocarbazate.	Break MKB, Fung TY, Koh MZ, Ho WY, Tahir MIM, Elfar OA, Syed RU, Khojali WMA, Alluhaibi TM, Huwaimel B, Wiart C, Khoo TJ.	Molecules	10.3390/molecules28135009	2023
	Biological Activities and the Essential Oil Analysis of Cousinia harazensis and C. calocephala.	Salimi-Sabour E, H Shirazi F, Mahboubi A, Mojab F, Irani M.	Iran J Pharm Res	10.22037/ijpr.2020.114155.14697	2021
Metabolism	Secondary Metabolites of the Genus Amycolatopsis: Structures, Bioactivities and Biosynthesis.	Song Z, Xu T, Wang J, Hou Y, Liu C, Liu S, Wu S.	Molecules	10.3390/molecules26071884	2021
Metabolism	Multiple Isoforms of Anti-Lipopolysaccharide Factors and Their Antimicrobial Functions in the Ridgetail Prawn Exopalaemon carinicauda.	Lv X, Li S, Zhang C, Xiang J, Li F.	Mar Drugs	10.3390/md16050145	2018
	Molecular Phylogenetics and Biological Potential of Fungal Endophytes From Plants of the Sundarbans Mangrove.	Rahaman MS, Siraj MA, Sultana S, Seidel V, Islam MA.	Front Microbiol	10.3389/fmicb.2020.570855	2020
Metabolism	Natural Product Potential of the Genus Nocardiopsis.	Ibrahim AH, Desoukey SY, Fouad MA, Kamel MS, Gulder TAM, Abdelmohsen UR.	Mar Drugs	10.3390/md16050147	2018
	Development and validation of microbial bioassay for quantification of Levofloxacin in pharmaceutical preparations.	Dafale NA, Semwal UP, Agarwal PK, Sharma P, Singh GN.	J Pharm Anal	10.1016/j.jpha.2014.07.007	2015
	The oxazolomycin family: a review of current knowledge.	Oleksak P, Gonda J, Nepovimova E, Kuca K, Musilek K.	RSC Adv	10.1039/d0ra08396h	2020
	Evaluation of Pharmacodynamic Interactions Between Telavancin and Aztreonam or Piperacillin/Tazobactam Against Pseudomonas aeruginosa, Escherichia coli and Methicillin-Resistant Staphylococcus aureus.	Yim J, Smith JR, Barber KE, Hallesy JA, Rybak MJ.	Infect Dis Ther	10.1007/s40121-016-0121-2	2016
Phylogeny	Isolation and Purification of an Antibacterial Protein from Immune Induced Haemolymph of American Cockroach, Periplaneta americana.	Basseri HR, Dadi-Khoeni A, Bakhtiari R, Abolhassani M, Hajihosseini-Baghdadabadi R.	J Arthropod Borne Dis		2016
Genetics	The quest for biofuels fuels genome sequencing.	Galperin MY.	Environ Microbiol	10.1111/j.1462-2920.2008.01754.x	2008
	Chemical compositions, contaminants, and residues of organic and conventional goat milk in Bogor District, Indonesia.	Wanniatie V, Sudarwanto MB, Purnawarman T, Jayanegara A.	Vet World	10.14202/vetworld.2019.1218-1224	2019
	Sakacin-A antimicrobial packaging for decreasing Listeria contamination in thin-cut meat: preliminary assessment.	Barbiroli A, Musatti A, Capretti G, Iametti S, Rollini M.	J Sci Food Agric	10.1002/jsfa.8120	2017
Enzymology	Saccharomonopyrones A-C, New alpha-Pyrones from a Marine Sediment-Derived Bacterium Saccharomonospora sp. CNQ-490.	Yim CY, Le TC, Lee TG, Yang I, Choi H, Lee J, Kang KY, Lee JS, Lim KM, Yee ST, Kang H, Nam SJ, Fenical W.	Mar Drugs	10.3390/md15080239	2017
	Donghaecyclinones A-C: New Cytotoxic Rearranged Angucyclinones from a Volcanic Island-Derived Marine Streptomyces sp.	Bae M, An JS, Hong SH, Bae ES, Chung B, Kwon Y, Hong S, Oh KB, Shin J, Lee SK, Oh DC.	Mar Drugs	10.3390/md18020121	2020
	Ability of Bicarbonate Supplementation To Sensitize Selected Methicillin-Resistant Staphylococcus aureus Strains to beta-Lactam Antibiotics in an Ex Vivo Simulated Endocardial Vegetation Model.	Rose WE, Bienvenida AM, Xiong YQ, Chambers HF, Bayer AS, Ersoy SC.	Antimicrob Agents Chemother	10.1128/aac.02072-19	2020
Metabolism	LanI-Mediated Lantibiotic Immunity in Bacillus subtilis: Functional Analysis.	Geiger C, Korn SM, Hasler M, Peetz O, Martin J, Kotter P, Morgner N, Entian KD.	Appl Environ Microbiol	10.1128/aem.00534-19	2019
	Biofilms harbour Clostridioides difficile, serving as a reservoir for recurrent infection.	Normington C, Moura IB, Bryant JA, Ewin DJ, Clark EV, Kettle MJ, Harris HC, Spittal W, Davis G, Henn MR, Ford CB, Wilcox MH, Buckley AM.	NPJ Biofilms Microbiomes	10.1038/s41522-021-00184-w	2021
Pathogenicity	Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics.	Ignasiak K, Maxwell A.	BMC Microbiol	10.1186/s12866-017-1133-0	2017
Pathogenicity	Nontherapeutic equivalence of a generic product of imipenem-cilastatin is caused more by chemical instability of the active pharmaceutical ingredient (imipenem) than by its substandard amount of cilastatin.	Agudelo M, Rodriguez CA, Zuluaga AF, Vesga O.	PLoS One	10.1371/journal.pone.0211096	2019
Metabolism	Ribosome engineering and fermentation optimization leads to overproduction of tiancimycin A, a new enediyne natural product from Streptomyces sp. CB03234.	Liu L, Pan J, Wang Z, Yan X, Yang D, Zhu X, Shen B, Duan Y, Huang Y.	J Ind Microbiol Biotechnol	10.1007/s10295-018-2014-8	2018
	Potent Phytotoxic Harziane Diterpenes from a Soft Coral-Derived Strain of the Fungus Trichoderma harzianum XS-20090075.	Zhao DL, Yang LJ, Shi T, Wang CY, Shao CL, Wang CY.	Sci Rep	10.1038/s41598-019-49778-7	2019
Metabolism	Biologically active metabolites produced by the basidiomycete Quambalaria cyanescens.	Stodulkova E, Cisarova I, Kolarik M, Chudickova M, Novak P, Man P, Kuzma M, Pavlu B, Cerny J, Flieger M.	PLoS One	10.1371/journal.pone.0118913	2015
	Bacillus licheniformis: A Producer of Antimicrobial Substances, including Antimycobacterials, Which Are Feasible for Medical Applications.	Shleeva MO, Kondratieva DA, Kaprelyants AS.	Pharmaceutics	10.3390/pharmaceutics15071893	2023
Pathogenicity	Peptidoglycan potentiates the membrane disrupting effect of the carboxyamidated form of DMS-DA6, a Gram-positive selective antimicrobial peptide isolated from Pachymedusa dacnicolor skin.	Cardon S, Sachon E, Carlier L, Drujon T, Walrant A, Aleman-Navarro E, Martinez-Osorio V, Guianvarc'h D, Sagan S, Fleury Y, Marquant R, Piesse C, Rosenstein Y, Auvynet C, Lacombe C.	PLoS One	10.1371/journal.pone.0205727	2018
Genetics	Lunaemycins, New Cyclic Hexapeptide Antibiotics from the Cave Moonmilk-Dweller Streptomyces lunaelactis MM109^T.	Martinet L, Naome A, Rezende LCD, Tellatin D, Pignon B, Docquier JD, Sannio F, Baiwir D, Mazzucchelli G, Frederich M, Rigali S.	Int J Mol Sci	10.3390/ijms24021114	2023
Phylogeny	Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria.	Sagova-Mareckova M, Ulanova D, Sanderova P, Omelka M, Kamenik Z, Olsovska J, Kopecky J.	BMC Microbiol	10.1186/s12866-015-0416-6	2015
	Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot Study.	Buckley AM, Moura IB, Arai N, Spittal W, Clark E, Nishida Y, Harris HC, Bentley K, Davis G, Wang D, Mitra S, Higashiyama T, Wilcox MH.	Front Cell Infect Microbiol	10.3389/fcimb.2021.670935	2021
Metabolism	Azithromycin concentrations in blood and gingival crevicular fluid after systemic administration.	Lai PC, Ho W, Jain N, Walters JD.	J Periodontol	10.1902/jop.2011.110012	2011
	Pharmacokinetics of Immediate and Sustained Release Cephalexin Administered by Different Routes to Llamas (Lama glama).	Kreil V, Ambros L, Prados AP, Tarragona L, Monfrinotti A, Bramuglia G, Rebuelto M.	Adv Pharmacol Sci	10.1155/2016/4621039	2016
Pathogenicity	Evaluation of daptomycin combinations with cephalosporins or gentamicin against Streptococcus mitis group strains in an in vitro model of simulated endocardial vegetations (SEVs).	Yim J, Smith JR, Singh NB, Rice S, Stamper K, Garcia de la Maria C, Bayer AS, Mishra NN, Miro JM, Tran TT, Arias CA, Sullam P, Rybak MJ.	J Antimicrob Chemother	10.1093/jac/dkx130	2017
	From by-products to new application opportunities: the enhancement of the leaves deriving from the fruit plants for new potential healthy products.	Regolo L, Giampieri F, Battino M, Armas Diaz Y, Mezzetti B, Elexpuru-Zabaleta M, Mazas C, Tutusaus K, Mazzoni L.	Front Nutr	10.3389/fnut.2024.1083759	2024
Metabolism	Antimicrobial peptide expression in a wild tobacco plant reveals the limits of host-microbe-manipulations in the field.	Weinhold A, Karimi Dorcheh E, Li R, Rameshkumar N, Baldwin IT.	Elife	10.7554/elife.28715	2018
	Comparative Study of Eis-like Enzymes from Pathogenic and Nonpathogenic Bacteria.	Green KD, Pricer RE, Stewart MN, Garneau-Tsodikova S.	ACS Infect Dis	10.1021/acsinfecdis.5b00036	2015
Pathogenicity	Association of Fidaxomicin with C. difficile Spores: Effects of Persistence on Subsequent Spore Recovery, Outgrowth and Toxin Production.	Chilton CH, Crowther GS, Ashwin H, Longshaw CM, Wilcox MH.	PLoS One	10.1371/journal.pone.0161200	2016
Metabolism	Effect of gingivitis on azithromycin concentrations in gingival crevicular fluid.	Jain N, Lai PC, Walters JD.	J Periodontol	10.1902/jop.2012.110558	2012
	Development of a micromanipulation method for single cell isolation of prokaryotes and its application in food safety.	Hohnadel M, Maumy M, Chollet R.	PLoS One	10.1371/journal.pone.0198208	2018
Enzymology	Identification of Widespread Antibiotic Exposure in Patients With Cholera Correlates With Clinically Relevant Microbiota Changes.	Alexandrova L, Haque F, Rodriguez P, Marrazzo AC, Grembi JA, Ramachandran V, Hryckowian AJ, Adams CM, Siddique MSA, Khan AI, Qadri F, Andrews JR, Rahman M, Spormann AM, Schoolnik GK, Chien A, Nelson EJ.	J Infect Dis	10.1093/infdis/jiz299	2019
Pathogenicity	Comparison of Azithromycin and Amoxicillin Before Dental Implant Placement: An Exploratory Study of Bioavailability and Resolution of Postoperative Inflammation.	Escalante MG, Eubank TD, Leblebicioglu B, Walters JD.	J Periodontol	10.1902/jop.2015.150024	2015
Pathogenicity	Daptomycin Dose-Ranging Evaluation with Single-Dose versus Multidose Ceftriaxone Combinations against Streptococcus mitis/oralis in an Ex Vivo Simulated Endocarditis Vegetation Model.	Kebriaei R, Rice SA, Stamper KC, Seepersaud R, Garcia-de-la-Maria C, Mishra NN, Miro JM, Arias CA, Tran TT, Sullam PM, Bayer AS, Rybak MJ.	Antimicrob Agents Chemother	10.1128/aac.00386-19	2019
Enzymology	Multi-substrate biodegradation of chlorophenols by defined microbial consortium.	Patel BP, Kumar A.	3 Biotech	10.1007/s13205-016-0511-x	2016
	Pulicaria dysenterica (L.) Bernh.-Rightfully Earned Name? Identification and Biological Activity of New 3-Methoxycuminyl Esters from P. dysenterica Essential Oil.	Radulovic NS, Mladenovic MZ, Vukicevic DR, Stojanovic NM, Randjelovic PJ, Stojanovic-Radic ZZ, Boylan F.	Plants (Basel)	10.3390/plants11233340	2022
	Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits.	Adam D, Maciejewska M, Naome A, Martinet L, Coppieters W, Karim L, Baurain D, Rigali S.	Antibiotics (Basel)	10.3390/antibiotics7020028	2018
Enzymology	Characterization of Micrococcus strains isolated from indoor air.	Kooken JM, Fox KF, Fox A.	Mol Cell Probes	10.1016/j.mcp.2011.09.003	2012
Pathogenicity	Influence of Inoculum Effect on the Efficacy of Daptomycin Monotherapy and in Combination with beta-Lactams against Daptomycin-Susceptible Enterococcus faecium Harboring LiaSR Substitutions.	Kebriaei R, Rice SA, Singh KV, Stamper KC, Dinh AQ, Rios R, Diaz L, Murray BE, Munita JM, Tran TT, Arias CA, Rybak MJ.	Antimicrob Agents Chemother	10.1128/aac.00315-18	2018
Biotechnology	Validation of the One Broth One Plate for Salmonella Method for Detection of Salmonella Spp. in Select Food and Environmental Samples: AOAC Performance Tested MethodSM 102002.	Alles S, Roman B, Le QN, Kurteu M, Elmerhebi E, Potter C, Mozola M, Thompson W, Bastin B, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa149	2021
	Rapid Turbidimetric Assay to Determine the Potency of Daptomycin in Lyophilized Powder.	Totoli EG, Salgado HR.	Pharmaceutics	10.3390/pharmaceutics7030106	2015
	Incorporation of real-time PCR into routine public health surveillance of culture negative bacterial meningitis in São Paulo, Brazil.	Sacchi CT, Fukasawa LO, Goncalves MG, Salgado MM, Shutt KA, Carvalhanas TR, Ribeiro AF, Kemp B, Gorla MC, Albernaz RK, Marques EG, Cruciano A, Waldman EA, Brandileone MC, Harrison LH, Sao Paulo RT-PCR Surveillance Project Team.	PLoS One	10.1371/journal.pone.0020675	2011
Pathogenicity	Copaifera langsdorffii oleoresin and its isolated compounds: antibacterial effect and antiproliferative activity in cancer cell lines.	Abrao F, de Araujo Costa LD, Alves JM, Senedese JM, de Castro PT, Ambrosio SR, Veneziani RC, Bastos JK, Tavares DC, Martins CH.	BMC Complement Altern Med	10.1186/s12906-015-0961-4	2015
Pathogenicity	beta-Lactams enhance daptomycin activity against vancomycin-resistant Enterococcus faecalis and Enterococcus faecium in in vitro pharmacokinetic/pharmacodynamic models.	Smith JR, Barber KE, Raut A, Rybak MJ.	Antimicrob Agents Chemother	10.1128/aac.00053-15	2015
Metabolism	Hormaomycins B and C: New Antibiotic Cyclic Depsipeptides from a Marine Mudflat-Derived Streptomyces sp.	Bae M, Chung B, Oh KB, Shin J, Oh DC.	Mar Drugs	10.3390/md13085187	2015
	Microbial screening methods for detection of antibiotic residues in slaughter animals.	Pikkemaat MG.	Anal Bioanal Chem	10.1007/s00216-009-2841-6	2009
Pathogenicity	Telavancin demonstrates activity against methicillin-resistant Staphylococcus aureus isolates with reduced susceptibility to vancomycin, daptomycin, and linezolid in broth microdilution MIC and one-compartment pharmacokinetic/pharmacodynamic models.	Smith JR, Barber KE, Hallesy J, Raut A, Rybak MJ.	Antimicrob Agents Chemother	10.1128/aac.00773-15	2015
Pathogenicity	Potential of lactoferrin to prevent antibiotic-induced Clostridium difficile infection.	Chilton CH, Crowther GS, Spiewak K, Brindell M, Singh G, Wilcox MH, Monaghan TM.	J Antimicrob Chemother	10.1093/jac/dkv452	2016
	Bioactive Marine Xanthones: A Review.	Soares JX, Loureiro DRP, Dias AL, Reis S, Pinto MMM, Afonso CMM.	Mar Drugs	10.3390/md20010058	2022
Pathogenicity	Comparative activities of telavancin combined with nafcillin, imipenem, and gentamicin against Staphylococcus aureus.	Leonard SN, Supple ME, Gandhi RG, Patel MD.	Antimicrob Agents Chemother	10.1128/aac.02127-12	2013
	Inoculum effect on the efficacies of amoxicillin-clavulanate, piperacillin-tazobactam, and imipenem against extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli in an experimental murine sepsis model.	Docobo-Perez F, Lopez-Cerero L, Lopez-Rojas R, Egea P, Dominguez-Herrera J, Rodriguez-Bano J, Pascual A, Pachon J.	Antimicrob Agents Chemother	10.1128/aac.02190-12	2013
Pathogenicity	Reversible daptomycin tolerance of adherent staphylococci in an implant infection model.	John AK, Schmaler M, Khanna N, Landmann R.	Antimicrob Agents Chemother	10.1128/aac.00172-11	2011
	Surfactant-stabilized emulsion increases gentamicin elution from bone cement.	Miller RB, McLaren AC, Leon CM, Vernon BL, McLemore R.	Clin Orthop Relat Res	10.1007/s11999-011-1934-7	2011
Metabolism	Lincosamide synthetase--a unique condensation system combining elements of nonribosomal peptide synthetase and mycothiol metabolism.	Janata J, Kadlcik S, Koberska M, Ulanova D, Kamenik Z, Novak P, Kopecky J, Novotna J, Radojevic B, Plhackova K, Gazak R, Najmanova L.	PLoS One	10.1371/journal.pone.0118850	2015
	Structures, Activities and Drug-Likeness of Anti-Infective Xanthone Derivatives Isolated from the Marine Environment: A Review.	Loureiro DRP, Soares JX, Costa JC, Magalhaes AF, Azevedo CMG, Pinto MMM, Afonso CMM.	Molecules	10.3390/molecules24020243	2019
	Separacenes A-D, novel polyene polyols from the marine actinomycete, Streptomyces sp.	Bae M, Kim H, Shin Y, Kim BY, Lee SK, Oh KB, Shin J, Oh DC.	Mar Drugs	10.3390/md11082882	2013
Metabolism	Rhodococcus as A Versatile Biocatalyst in Organic Synthesis.	Busch H, Hagedoorn PL, Hanefeld U.	Int J Mol Sci	10.3390/ijms20194787	2019
	Evaluation of High-Dose Daptomycin Versus Vancomycin Alone or Combined with Clarithromycin or Rifampin Against Staphylococcus aureus and S. epidermidis in a Novel In Vitro PK/PD Model of Bacterial Biofilm.	Hall Snyder AD, Vidaillac C, Rose W, McRoberts JP, Rybak MJ.	Infect Dis Ther	10.1007/s40121-014-0055-5	2014
Metabolism	Widespread head-to-head hydrocarbon biosynthesis in bacteria and role of OleA.	Sukovich DJ, Seffernick JL, Richman JE, Gralnick JA, Wackett LP.	Appl Environ Microbiol	10.1128/aem.00436-10	2010
	A diverse intrinsic antibiotic resistome from a cave bacterium.	Pawlowski AC, Wang W, Koteva K, Barton HA, McArthur AG, Wright GD.	Nat Commun	10.1038/ncomms13803	2016
	Available for millions of years but discovered through the last decade: Insects as a source of nutrients and energy in animal diets.	Kieronczyk B, Rawski M, Mikolajczak Z, Homska N, Jankowski J, Ognik K, Jozefiak A, Mazurkiewicz J, Jozefiak D.	Anim Nutr	10.1016/j.aninu.2022.06.015	2022
	A Class 1 Histone Deacetylase as Major Regulator of Secondary Metabolite Production in Aspergillus nidulans.	Pidroni A, Faber B, Brosch G, Bauer I, Graessle S.	Front Microbiol	10.3389/fmicb.2018.02212	2018
	Anthraquinones and Their Analogues from Marine-Derived Fungi: Chemistry and Biological Activities.	Hafez Ghoran S, Taktaz F, Ayatollahi SA, Kijjoa A.	Mar Drugs	10.3390/md20080474	2022
	Comparing the similarity of different groups of bacteria to the human proteome.	Trost B, Pajon R, Jayaprakash T, Kusalik A.	PLoS One	10.1371/journal.pone.0034007	2012
Pathogenicity	Macrolones Are a Novel Class of Macrolide Antibiotics Active against Key Resistant Respiratory Pathogens In Vitro and In Vivo.	Cipcic Paljetak H, Verbanac D, Padovan J, Dominis-Kramaric M, Kelneric Z, Peric M, Banjanac M, Ergovic G, Simon N, Broskey J, Holmes DJ, Erakovic Haber V.	Antimicrob Agents Chemother	10.1128/aac.00524-16	2016
Enzymology	Even apparently insignificant chemical deviations among bioequivalent generic antibiotics can lead to therapeutic nonequivalence: the case of meropenem.	Agudelo M, Rodriguez CA, Pelaez CA, Vesga O.	Antimicrob Agents Chemother	10.1128/aac.00350-13	2014
Metabolism	Tuning the properties of the bacterial membrane with aminoacylated phosphatidylglycerol.	Roy H.	IUBMB Life	10.1002/iub.240	2009
Metabolism	Circumventing the effect of product toxicity: development of a novel two-stage production process for the lantibiotic gallidermin.	Valsesia G, Medaglia G, Held M, Minas W, Panke S.	Appl Environ Microbiol	10.1128/aem.01969-06	2007
Metabolism	Bovine intestinal bacteria inactivate and degrade ceftiofur and ceftriaxone with multiple beta-lactamases.	Wagner RD, Johnson SJ, Cerniglia CE, Erickson BD.	Antimicrob Agents Chemother	10.1128/aac.00008-11	2011
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Enzymology	Phosphoglucomutase of Yersinia pestis is required for autoaggregation and polymyxin B resistance.	Felek S, Muszynski A, Carlson RW, Tsang TM, Hinnebusch BJ, Krukonis ES.	Infect Immun	10.1128/iai.00997-09	2010
Pathogenicity	New real-time PCR assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci.	Huletsky A, Giroux R, Rossbach V, Gagnon M, Vaillancourt M, Bernier M, Gagnon F, Truchon K, Bastien M, Picard FJ, van Belkum A, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.5.1875-1884.2004	2004
Genetics	Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae.	Richards VP, Lang P, Bitar PD, Lefebure T, Schukken YH, Zadoks RN, Stanhope MJ.	Infect Genet Evol	10.1016/j.meegid.2011.04.019	2011
Enzymology	Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.	Davis KE, Joseph SJ, Janssen PH.	Appl Environ Microbiol	10.1128/aem.71.2.826-834.2005	2005
	Functional genome analysis and anti-Helicobacter pylori activity of a novel bacteriocinogenic Lactococcus sp. NH2-7C from Thai fermented pork (Nham).	Kingkaew E, Woraprayote W, Booncharoen A, Niwasabutra K, Janyaphisan T, Vilaichone RK, Yamaoka Y, Visessanguan W, Tanasupawat S.	Sci Rep	10.1038/s41598-023-47687-4	2023
Metabolism	Overexpression of the RNA-binding protein NrdA affects global gene expression and secondary metabolism in Aspergillus species.	Kadooka C, Izumitsu K, Asai T, Hiramatsu K, Mori K, Okutsu K, Yoshizaki Y, Takamine K, Goto M, Tamaki H, Futagami T.	mSphere	10.1128/msphere.00849-24	2025
	Kunkecin A, a New Nisin Variant Bacteriocin Produced by the Fructophilic Lactic Acid Bacterium, Apilactobacillus kunkeei FF30-6 Isolated From Honey Bees.	Zendo T, Ohashi C, Maeno S, Piao X, Salminen S, Sonomoto K, Endo A.	Front Microbiol	10.3389/fmicb.2020.571903	2020
	Metabolic Engineering of Escherichia coli for Enhanced Production of Naringenin 7-Sulfate and Its Biological Activities.	Chu LL, Dhakal D, Shin HJ, Jung HJ, Yamaguchi T, Sohng JK.	Front Microbiol	10.3389/fmicb.2018.01671	2018
Metabolism	Secondary Metabolites of Actinomycetes and their Antibacterial, Antifungal and Antiviral Properties.	Jakubiec-Krzesniak K, Rajnisz-Mateusiak A, Guspiel A, Ziemska J, Solecka J.	Pol J Microbiol	10.21307/pjm-2018-048	2018
Metabolism	Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum.	Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, Takano H.	Sci Rep	10.1038/s41598-019-49384-7	2019
Metabolism	Isolation and characterization of enterocin W, a novel two-peptide lantibiotic produced by Enterococcus faecalis NKR-4-1.	Sawa N, Wilaipun P, Kinoshita S, Zendo T, Leelawatcharamas V, Nakayama J, Sonomoto K.	Appl Environ Microbiol	10.1128/aem.06497-11	2012
Metabolism	Identification and characterization of leucocyclicin Q, a novel cyclic bacteriocin produced by Leuconostoc mesenteroides TK41401.	Masuda Y, Ono H, Kitagawa H, Ito H, Mu F, Sawa N, Zendo T, Sonomoto K.	Appl Environ Microbiol	10.1128/aem.06348-11	2011
	The genus Weissella: taxonomy, ecology and biotechnological potential.	Fusco V, Quero GM, Cho GS, Kabisch J, Meske D, Neve H, Bockelmann W, Franz CM.	Front Microbiol	10.3389/fmicb.2015.00155	2015
	Biological Activity of Recently Discovered Halogenated Marine Natural Products.	Gribble GW.	Mar Drugs	10.3390/md13074044	2015
	Isolation and Characterization of Bacteria Colonizing Acartia tonsa Copepod Eggs and Displaying Antagonist Effects against Vibrio anguillarum, Vibrio alginolyticus and Other Pathogenic Strains.	Zidour M, Chevalier M, Belguesmia Y, Cudennec B, Grard T, Drider D, Souissi S, Flahaut C.	Front Microbiol	10.3389/fmicb.2017.01919	2017
	Production of Pumilarin and a Novel Circular Bacteriocin, Altitudin A, by Bacillus altitudinis ECC22, a Soil-Derived Bacteriocin Producer.	Lafuente I, Sevillano E, Pena N, Cuartero A, Hernandez PE, Cintas LM, Munoz-Atienza E, Borrero J.	Int J Mol Sci	10.3390/ijms25042020	2024
	First European Erwinia amylovora Lytic Bacteriophage Cocktails Effective in the Host: Characterization and Prospects for Fire Blight Biocontrol.	Biosca EG, Delgado Santander R, Moran F, Figas-Segura A, Vazquez R, Catala-Senent JF, Alvarez B.	Biology (Basel)	10.3390/biology13030176	2024
	Exploring the Antibacterial Activity of Pestalotiopsis spp. under Different Culture Conditions and Their Chemical Diversity Using LC-ESI-Q-TOF-MS.	Aguilar-Perez MM, Torres-Mendoza D, Vasquez R, Rios N, Cubilla-Rios L.	J Fungi (Basel)	10.3390/jof6030140	2020
Metabolism	Mutasynthesis of lincomycin derivatives with activity against drug-resistant staphylococci.	Ulanova D, Novotna J, Smutna Y, Kamenik Z, Gazak R, Sulc M, Sedmera P, Kadlcik S, Plhackova K, Janata J.	Antimicrob Agents Chemother	10.1128/aac.00918-09	2010
Metabolism	In vitro validation studies for adhesion factor and adhesion efficiency of probiotic Bacillus licheniformis MCC 2514 and Bifidobacterium breve NCIM 5671 on HT-29 cell lines.	Rohith HS, Halami PM	Arch Microbiol	10.1007/s00203-021-02257-y	2021
	Comparative Study of the Antimicrobial Activity of Selenium Nanoparticles With Different Surface Chemistry and Structure.	Filipovic N, Usjak D, Milenkovic MT, Zheng K, Liverani L, Boccaccini AR, Stevanovic MM	Front Bioeng Biotechnol	10.3389/fbioe.2020.624621	2021
Phylogeny	Genome Analysis of Lactobacillus plantarum Isolated From Some Indian Fermented Foods for Bacteriocin Production and Probiotic Marker Genes.	Goel A, Halami PM, Tamang JP	Front Microbiol	10.3389/fmicb.2020.00040	2020
Phylogeny	Characterisation of Two Polyketides from Streptomyces sp. SKH1-2 Isolated from Roots of Musa (ABB) cv. 'Kluai Sao Kratuep Ho'.	Kuncharoen N, Fukasawa W, Iwatsuki M, Mori M, Shiomi K, Tanasupawat S	Int Microbiol	10.1007/s10123-019-00071-7	2019
Pathogenicity	Characterization and mode of action of a potent bio-preservative from food-grade Bacillus licheniformis MCC 2016.	Vadakedath N, Halami PM	Prep Biochem Biotechnol	10.1080/10826068.2019.1566141	2019
	Development of a Novel Escherichia coli-Kocuria Shuttle Vector Using the Cryptic pKPAL3 Plasmid from K. palustris IPUFS-1 and Its Utilization in Producing Enantiopure (S)-Styrene Oxide.	Toda H, Itoh N	Front Microbiol	10.3389/fmicb.2017.02313	2017
	Genetic Variation of pln Loci Among Probiotic Lactobacillus plantarum Group Strains with Antioxidant and Cholesterol-Lowering Ability.	Devi SM, Halami PM	Probiotics Antimicrob Proteins	10.1007/s12602-017-9336-0	2019
Pathogenicity	Inhibition of bacterial biofilms by carboxymethyl chitosan combined with silver, zinc and copper salts.	Goncalves RC, da Silva DP, Signini R, Naves PLF	Int J Biol Macromol	10.1016/j.ijbiomac.2017.07.048	2017
Enzymology	Chemical composition and antimicrobial activity of the essential oils of Onychopetalum amazonicum R.E.Fr.	de Lima BR, da Silva FM, Soares ER, de Almeida RA, da Silva Filho FA, Pereira Junior RC, Hernandez Tasco AJ, Salvador MJ, Koolen HH, de Souza AD, Pinheiro ML	Nat Prod Res	10.1080/14786419.2016.1163691	2016
Metabolism	Polysaccharide-based silver nanoparticles synthesized by Klebsiella oxytoca DSM 29614 cause DNA fragmentation in E. coli cells.	Baldi F, Daniele S, Gallo M, Paganelli S, Battistel D, Piccolo O, Faleri C, Puglia AM, Gallo G	Biometals	10.1007/s10534-016-9918-4	2016
Genetics	Complete genome sequence of the soil actinomycete Kocuria rhizophila.	Takarada H, Sekine M, Kosugi H, Matsuo Y, Fujisawa T, Omata S, Kishi E, Shimizu A, Tsukatani N, Tanikawa S, Fujita N, Harayama S	J Bacteriol	10.1128/JB.01853-07	2008
Phylogeny	Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila.	Tang JS, Gillevet PM	Int J Syst Evol Microbiol	10.1099/ijs.0.02372-0	2003
Phylogeny	Discovery of two new actinobacteria, Micromonospora palythoicola sp. nov. and Streptomyces poriticola sp. nov., isolated from marine invertebrates.	Kanchanasin P, Salahong T, Sripreechasak P, Suriyachadkun C, Harunari E, Igarashi Y, Tanasupawat S, Tawinwung S, Vimolmangkang S, Chaotham C, Phongsopitanun W.	Sci Rep	10.1038/s41598-024-73040-4	2024
	Streptomyces tardus sp. nov.: A Slow-Growing Actinobacterium Producing Candicidin, Isolated From Sediments of the Trondheim Fjord.	Kralova S, Sandoval-Powers M, Fawwal DV, Degnes KF, Lewin AS, Klinkenberg G, Nguyen GS, Liles MR, Wentzel A.	Front Microbiol	10.3389/fmicb.2021.714233	2021
Phylogeny	Actinomadura violacea sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand.	Kanchanasin P, Phongsopitanun W, Yuki M, Kudo T, Ohkuma M, Nakashima T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005126	2021

References

#141	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 348
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#36878	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122203	Collection of Institut Pasteur ; Curators of the CIP; CIP 53.45
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kocuria rhizophila (DSM 348, ATCC 9341, PCI 1001)

Name and taxonomic classification

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