Kocuria rhizophila (DSM 31022, G2)

Name: Kocuria rhizophila (DSM 31022, G2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130424

Type strain

Strain Designation G2

Culture col. no. DSM 31022 G2

NCBI tax ID(s) 72000

Special Collections DSMZ ESA

History <- European Space Agency, Noordwijk, Netherlands <- A. Auerbach, Univ. Regensburg, Germany; G2

Links

Kocuria rhizophila G2 is a bacterium that was isolated from cleanroom, wipe sample.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 407388

DSM 31022

@ref 20215

Last LPSN update 2026-02-09 11:31:13

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Kocuria

Species Kocuria rhizophila

Full scientific name Kocuria rhizophila Kovács et al. 1999

BacDive ID	Other strains from **Kocuria rhizophila** (14)	Type strain
7647	K. rhizophila TA68, DSM 11926, CCM 4950, IFO 16319, NBRC ... (type strain)
7646	K. rhizophila DSM 348, ATCC 9341, PCI 1001, JCM 20050, ...
7648	K. rhizophila DSM 46222, ATCC 9341a, IMET 10748, NCIB 9660, ...
7649	K. rhizophila ES-145, DSM 30763
103061	K. rhizophila STI05004(IMET), pS4,
134482	K. rhizophila CIP 106519, ATCC 15957, CCRC 11055, CCTM ...
154534	K. rhizophila CCUG 54274
157393	K. rhizophila IMI 501153
159387	K. rhizophila T_C4, DSM 110319
159388	K. rhizophila T_C5, DSM 110320
159389	K. rhizophila T_C7, DSM 110322
159390	K. rhizophila S23/2, DSM 110885
159391	K. rhizophila TO-T1, DSM 110960
169443	K. rhizophila TURIN101221_C9b1, DSM 113549

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	93.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21616	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21616	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Clean room

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21616	cleanroom, wipe sample	Göttingen, MPS	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21616	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	Draft genome of Kocuria rhizophila G2 assembly for Kocuria rhizophila G2	contig	GCA_001499775	2713896980	72000	61.66

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kocuria rhizophila G2
NCBI: GCA_001499775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.20	no
125439	motility	BacteriaNetⓘ	no	60.80	no
125439	gram_stain	BacteriaNetⓘ	positive	93.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.30	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21616	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 31022
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us