Citricoccus nitrophenolicus (DSM 23311, CCUG 59571, JCM 19111)

Name: Citricoccus nitrophenolicus (DSM 23311, CCUG 59571, JCM 19111)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7635

Type strain

Strain Designation PNP1, PNP_P1

Culture col. no. DSM 23311 CCUG 59571 JCM 19111 PNP1 PNP_P1

NCBI tax ID(s) 863575

Special Collections DSMZ CCUG JCM

History <- K. Ingvorsen, Dept. Biological Sci., Aarhus Univ., Denmark; PNP1 <- M. B. Nielsen CCUG 59571 <-- K. Ingvorsen PNP1 <-- M. B. Nielsen.

Links

Citricoccus nitrophenolicus PNP1 is an aerobe bacterium that was isolated from sludge from wastewater treatment plant.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406924

JCM 19111,DSM 23311,CCUG 59571

@ref 20215

Last LPSN update 2026-02-09 11:19:31

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Citricoccus

Species Citricoccus nitrophenolicus

Full scientific name Citricoccus nitrophenolicus Nielsen et al. 2012

Morphology

Colony morphology

62019

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16782	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16782	positive	growth	28
62019	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

62019

Oxygen toleranceaerobe

Murein

@ref	Murein short key	Type
16782	A11.40	A4alpha L-Lys-Gly-D-Glu

Observation

67770

Observationquinones: MK-8(H₂), MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16782	sludge from wastewater treatment plant		Northern Jutland	Denmark	DNK	Europe
62019	Wastewater treatment plant	1994	Northern Jutland	Denmark	DNK	Europe
67770	Sludge from a waste water treatment plant at a chemical factory		Jutland	Denmark	DNK	Europe

Taxonmaps

69479

Global distribution of 16S sequence GU797177 (>99% sequence identity) for Micrococcus from Microbeatlas

Aquatic Samples	98
Soil Samples	184
Animal Samples	359
Plant Samples	246
Total Samples	887

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16782	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954443v1 assembly for Citricoccus nitrophenolicus JCM 19111	scaffold	GCA_039544435	863575	62.09
124043	ASM4264906v1 assembly for Citricoccus nitrophenolicus CCUG 59571	scaffold	GCA_042649065	863575	60.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16782	Citricoccus nitrophenolicus strain PNP1 16S ribosomal RNA gene, partial sequence	GU797177	1513		863575

GC content

@ref	GC-content (mol%)	Method
16782	68.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Biodegradation of para-nitrophenol by Citricoccus nitrophenolicus strain PNP1(T) at high pH.	Nielsen MB, Ingvorsen K	Biodegradation	10.1007/s10532-012-9559-4	2012
Metabolism	Description of Citricoccus nitrophenolicus sp. nov., a para-nitrophenol degrading actinobacterium isolated from a wastewater treatment plant and emended description of the genus Citricoccus Altenburger et al. 2002.	Nielsen MB, Kjeldsen KU, Ingvorsen K	Antonie Van Leeuwenhoek	10.1007/s10482-010-9513-6	2010

References

#16782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23311
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62019	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59571
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Citricoccus nitrophenolicus (DSM 23311, CCUG 59571, JCM 19111)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039544435

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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