Name: Citricoccus nitrophenolicus PNP1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7635

Type strain:

Species: Citricoccus nitrophenolicus

Strain Designation: PNP1, PNP_P1

Culture col. no.: DSM 23311, CCUG 59571, JCM 19111

Strain history: CCUG 59571 <-- K. Ingvorsen PNP1 <-- M. B. Nielsen.

NCBI tax ID(s): 863575 (species)

SI-ID 406924

DSM 23311, CCUG 59571

Special Collections

Section

Citricoccus nitrophenolicus PNP1 is an aerobe bacterium that was isolated from sludge from wastewater treatment plant.

aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Citricoccus*
	Species	**Citricoccus nitrophenolicus**
	Full Scientific Name (LPSN)	Citricoccus nitrophenolicus Nielsen et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #62019]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16782]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16782]

Culture medium growth

[Ref.: #16782]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16782]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16782]	growth	28 °C
[Ref.: #62019]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62019]

Oxygen tolerance

aerobe

[Ref.: #16782]	Murein short key	A11.40
[Ref.: #16782]	Murein types	A4alpha L-Lys-Gly-D-Glu

[Ref.: #67770]

Observation

quinones: MK-8(H₂), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16782]	Sample type/isolated from	sludge from wastewater treatment plant
[Ref.: #16782]	Geographic location (country and/or sea, region)	Northern Jutland
[Ref.: #16782]	Country	Denmark
[Ref.: #16782]	Country ISO 3 Code	DNK
[Ref.: #16782]	Continent	Europe

[Ref.: #62019]	Sample type/isolated from	Wastewater treatment plant
[Ref.: #62019]	Sampling date	1994
[Ref.: #62019]	Geographic location (country and/or sea, region)	Northern Jutland
[Ref.: #62019]	Country	Denmark
[Ref.: #62019]	Country ISO 3 Code	DNK
[Ref.: #62019]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sludge from a waste water treatment plant at a chemical factory
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jutland
[Ref.: #67770]	Country	Denmark
[Ref.: #67770]	Country ISO 3 Code	DNK
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU797177 (>99% sequence identity) for Micrococcus from Microbeatlas

Aquatic Samples	98
Soil Samples	184
Animal Samples	359
Plant Samples	246
Total Samples	887

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16782]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16782]	Citricoccus nitrophenolicus strain PNP1 16S ribosomal RNA gene, partial sequence	GU797177	1513	GenBank ENA	863575 tax ID

[Ref.: #16782]

GC-content

68.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16782]

Culture collection no.

DSM 23311, CCUG 59571, JCM 19111

[Ref.: #77079]

SI-ID 406924

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Biodegradation of para-nitrophenol by Citricoccus nitrophenolicus strain PNP1(T) at high pH.	Nielsen MB, Ingvorsen K	Biodegradation	10.1007/s10532-012-9559-4	2012	*
Metabolism	Description of Citricoccus nitrophenolicus sp. nov., a para-nitrophenol degrading actinobacterium isolated from a wastewater treatment plant and emended description of the genus Citricoccus Altenburger et al. 2002.	Nielsen MB, Kjeldsen KU, Ingvorsen K	Antonie Van Leeuwenhoek	10.1007/s10482-010-9513-6	2010	*

References

#16782

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23311

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62019 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59571
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77079

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406924.1 )

* These data were automatically processed and therefore are not curated

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