Strain identifier

BacDive ID: 7635

Type strain: Yes

Species: Citricoccus nitrophenolicus

Strain Designation: PNP1, PNP_P1

Strain history: CCUG 59571 <-- K. Ingvorsen PNP1 <-- M. B. Nielsen.

NCBI tax ID(s): 863575 (species)

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General

@ref: 16782

BacDive-ID: 7635

DSM-Number: 23311

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Citricoccus nitrophenolicus PNP1 is an aerobe, mesophilic bacterium that was isolated from sludge from wastewater treatment plant.

NCBI tax id

  • NCBI tax id: 863575
  • Matching level: species

strain history

@refhistory
16782<- K. Ingvorsen, Dept. Biological Sci., Aarhus Univ., Denmark; PNP1 <- M. B. Nielsen
67770CCUG 59571 <-- K. Ingvorsen PNP1 <-- M. B. Nielsen.

doi: 10.13145/bacdive7635.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Citricoccus
  • species: Citricoccus nitrophenolicus
  • full scientific name: Citricoccus nitrophenolicus Nielsen et al. 2012

@ref: 16782

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Citricoccus

species: Citricoccus nitrophenolicus

full scientific name: Citricoccus nitrophenolicus Nielsen et al. 2012

strain designation: PNP1, PNP_P1

type strain: yes

Morphology

colony morphology

  • @ref: 62019
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 16782
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16782positivegrowth28mesophilic
62019positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62019
  • oxygen tolerance: aerobe

murein

  • @ref: 16782
  • murein short key: A11.40
  • type: A4alpha L-Lys-Gly-D-Glu

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2), MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16782sludge from wastewater treatment plantNorthern JutlandDenmarkDNKEurope
62019Wastewater treatment plantNorthern JutlandDenmarkDNKEurope1994
67770Sludge from a waste water treatment plant at a chemical factoryJutlandDenmarkDNKEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_14197.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_453;97_3040;98_6467;99_14197&stattab=map
  • Last taxonomy: Micrococcus
  • 16S sequence: GU797177
  • Sequence Identity:
  • Total samples: 887
  • soil counts: 184
  • aquatic counts: 98
  • animal counts: 359
  • plant counts: 246

Safety information

risk assessment

  • @ref: 16782
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16782
  • description: Citricoccus nitrophenolicus strain PNP1 16S ribosomal RNA gene, partial sequence
  • accession: GU797177
  • length: 1513
  • database: ena
  • NCBI tax ID: 863575

GC content

  • @ref: 16782
  • GC-content: 68.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 16782

culture collection no.: DSM 23311, CCUG 59571, JCM 19111

straininfo link

  • @ref: 77079
  • straininfo: 406924

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism20882410Description of Citricoccus nitrophenolicus sp. nov., a para-nitrophenol degrading actinobacterium isolated from a wastewater treatment plant and emended description of the genus Citricoccus Altenburger et al. 2002.Nielsen MB, Kjeldsen KU, Ingvorsen KAntonie Van Leeuwenhoek10.1007/s10482-010-9513-62010Acetates/metabolism, Actinobacteria/classification/genetics/*metabolism, Base Composition/genetics, Molecular Sequence Data, Nitrates/metabolism, Nitrites/metabolism, Nitrophenols/*metabolism, *Waste Disposal, Fluid, *Water MicrobiologyPhylogeny
Metabolism22678128Biodegradation of para-nitrophenol by Citricoccus nitrophenolicus strain PNP1(T) at high pH.Nielsen MB, Ingvorsen KBiodegradation10.1007/s10532-012-9559-42012Biodegradation, Environmental, Chlorophenols/*metabolism, Environmental Pollutants/*metabolism, Hydrogen-Ion Concentration, Micrococcaceae/genetics/growth & development/isolation & purification/*metabolism, Oxygen/metabolism, Waste Water/microbiologyEnzymology

Reference

@idauthorscataloguedoi/urltitle
16782Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
62019Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59571)https://www.ccug.se/strain?id=59571
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77079Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406924.1StrainInfo: A central database for resolving microbial strain identifiers