Paenarthrobacter nitroguajacolicus G2-1 is an aerobe, Gram-positive, motile bacterium that was isolated from polluted soil.
Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Paenarthrobacter |
| Species Paenarthrobacter nitroguajacolicus |
| Full scientific name Paenarthrobacter nitroguajacolicus (Kotoucková et al. 2004) Busse 2016 |
| Synonyms (1) |
| BacDive ID | Other strains from Paenarthrobacter nitroguajacolicus (3) | Type strain |
|---|---|---|
| 7593 | P. nitroguajacolicus 8/3, DSM 15233, CCM 4925 | |
| 7594 | P. nitroguajacolicus P1P, DSM 15234, CCM 7049 | |
| 7595 | P. nitroguajacolicus E1, DSM 30855 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5771 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 18521 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18521 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18521 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18521 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18521 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18521 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 37401 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 121313 | CIP Medium 464 | Medium recipe at CIP | |||
| 121313 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 5771 | A11.17 | A3alpha L-Lys-L-Ala-L-Thr-L-Ala |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 30089 | 30089 ChEBI | acetate | + | carbon source | |
| 30089 | 16449 ChEBI | alanine | + | carbon source | |
| 18521 | 22599 ChEBI | arabinose | + | ||
| 30089 | 22653 ChEBI | asparagine | + | carbon source | |
| 30089 | 17057 ChEBI | cellobiose | + | carbon source | |
| 18521 | 62968 ChEBI | cellulose | + | ||
| 121313 | 16947 ChEBI | citrate | - | carbon source | |
| 30089 | 23652 ChEBI | dextrin | + | carbon source | |
| 30089 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 121313 | 4853 ChEBI | esculin | + | hydrolysis | |
| 18521 | 28757 ChEBI | fructose | + | ||
| 30089 | 28757 ChEBI | fructose | + | carbon source | |
| 30089 | 28260 ChEBI | galactose | + | carbon source | |
| 30089 | 5291 ChEBI | gelatin | + | carbon source | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 18521 | 17234 ChEBI | glucose | + | ||
| 30089 | 29987 ChEBI | glutamate | + | carbon source | |
| 30089 | 17754 ChEBI | glycerol | + | carbon source | |
| 30089 | 28087 ChEBI | glycogen | + | carbon source | |
| 121313 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 30089 | 25115 ChEBI | malate | + | carbon source | |
| 30089 | 17306 ChEBI | maltose | + | carbon source | |
| 18521 | 29864 ChEBI | mannitol | + | ||
| 30089 | 29864 ChEBI | mannitol | + | carbon source | |
| 30089 | 37684 ChEBI | mannose | + | carbon source | |
| 30089 | 51850 ChEBI | methyl pyruvate | + | carbon source | |
| 18521 | 17268 ChEBI | myo-inositol | + | ||
| 121313 | 17632 ChEBI | nitrate | - | reduction | |
| 121313 | 17632 ChEBI | nitrate | - | respiration | |
| 121313 | 16301 ChEBI | nitrite | - | reduction | |
| 30089 | 17272 ChEBI | propionate | + | carbon source | |
| 30089 | 17148 ChEBI | putrescine | + | carbon source | |
| 30089 | 15361 ChEBI | pyruvate | + | carbon source | |
| 18521 | 16634 ChEBI | raffinose | + | ||
| 30089 | 16634 ChEBI | raffinose | + | carbon source | |
| 18521 | 26546 ChEBI | rhamnose | + | ||
| 30089 | 33942 ChEBI | ribose | + | carbon source | |
| 30089 | 17822 ChEBI | serine | + | carbon source | |
| 30089 | 30911 ChEBI | sorbitol | + | carbon source | |
| 18521 | 17992 ChEBI | sucrose | + | ||
| 30089 | 17992 ChEBI | sucrose | + | carbon source | |
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 18521 | 18222 ChEBI | xylose | - |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 121313 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 30089 | acid phosphatase | + | 3.1.3.2 | |
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 121313 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 30089 | alkaline phosphatase | + | 3.1.3.1 | |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 30089 | alpha-galactosidase | + | 3.2.1.22 | |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 121313 | amylase | + | ||
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 121313 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 121313 | caseinase | + | 3.4.21.50 | |
| 30089 | catalase | + | 1.11.1.6 | |
| 121313 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 30089 | cytochrome oxidase | + | 1.9.3.1 | |
| 121313 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 121313 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 30089 | gelatinase | + | ||
| 121313 | gelatinase | + | ||
| 68379 | gelatinase | - | from API Coryne | |
| 121313 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 121313 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 121313 | lysine decarboxylase | - | 4.1.1.18 | |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 121313 | ornithine decarboxylase | - | 4.1.1.17 | |
| 121313 | oxidase | - | ||
| 121313 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 121313 | tryptophan deaminase | - | ||
| 121313 | tween esterase | - | ||
| 121313 | urease | - | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence AJ512504 (>99% sequence identity) for Paenarthrobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM131336v1 assembly for Paenarthrobacter nitroguajacolicus JCM 14115 | contig | 1303677 | 0 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 5771 | Arthrobacter nitroguaiacolicus partial 16S rRNA gene, strain CCM 4924T | AJ512504 | 1488 | 211146 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.13 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 58.23 | no |
| 125439 | motility | BacteriaNetⓘ | no | 79.46 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 92.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.80 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.80 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 61.50 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 90.52 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 95.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Effects of simulated space environmental conditions on cleanroom microbes. | Cassilly CD, Chander AM, Vaughn JA, Kunstman KJ, Green SJ, Venkateswaran K, Bertone PF, Bahr CW, Marcella SA, Morris HC. | Front Microbiol | 10.3389/fmicb.2025.1600106 | 2025 | |
| Phylogeny | Reclassification of Streptomyces violarus (Artamonova and Krassilnikov 1960) Pridham 1970 as a Later Heterotypic Synonym of Streptomyces violaceus (Rossi Doria 1891) Waksman 1953 using a Polyphasic Approach. | Long PL, Wang YF, Fu L, Xiao Y, Tang SG, Gao J. | Curr Microbiol | 10.1007/s00284-024-03820-8 | 2024 | |
| Enzymology | Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field. | Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC. | Arch Microbiol | 10.1007/s00203-014-1025-8 | 2014 | |
| Genetics | Morphological and genomic characteristics of two novel actinomycetes, Ornithinimicrobium sufpigmenti sp. nov. and Ornithinimicrobium faecis sp. nov. isolated from bat faeces (Rousettus leschenaultia and Taphozous perforates). | Huang Y, Zhang S, Tao Y, Yang J, Lu S, Jin D, Pu J, Luo W, Zheng H, Liu L, Jiang JF, Xu J. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1093407 | 2023 | |
| Phylogeny | Erythrobacter nanhaisediminis sp. nov., isolated from marine sediment of the South China Sea. | Xu M, Xin Y, Yu Y, Zhang J, Zhou Y, Liu H, Tian J, Li Y. | Int J Syst Evol Microbiol | 10.1099/ijs.0.014027-0 | 2010 | |
| Phylogeny | Arthrobacter bambusae sp. nov., isolated from soil of a bamboo grove. | Park Y, Kook M, Ngo HTT, Kim KY, Park SY, Mavlonov GT, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.064550-0 | 2014 | |
| Phylogeny | Arthrobacter nitroguajacolicus sp. nov., a novel 4-nitroguaiacol-degrading actinobacterium. | Kotouckova L, Schumann P, Durnova E, Sproer C, Sedlacek I, Neca J, Zdrahal Z, Nemec M | Int J Syst Evol Microbiol | 10.1099/ijs.0.02923-0 | 2004 |
| #5771 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15232 |
| #18521 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #26446 | IJSEM 773 2004 ( DOI 10.1099/ijs.0.02923-0 , PubMed 15143023 ) |
| #30089 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26446 |
| #37401 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #121313 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108435 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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