Herbiconiux ginsengi (DSM 19088, CGMCC 4.3491, JCM 13908)

Name: Herbiconiux ginsengi (DSM 19088, CGMCC 4.3491, JCM 13908)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7509

Type strain

Strain Designation wged11

Culture col. no. DSM 19088 CGMCC 4.3491 JCM 13908 NBRC 104580 wged11 2 more

NCBI tax ID(s) 381665

Special Collections DSMZ JCM KCTC CIP Literature strains

History <- JCM <- Ying Huang, wged 11 Y. Huang wged11. CIP <- 2007, JCM <- 2006, Y. Huang, Beijing, Chinese Acad. Sci., China: strain wged11

Links

Herbiconiux ginsengi wged11 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from tissue of surface sterilized ginseng root.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297249

CGMCC 4.3491,JCM 13908,DSM 19088,CIP 109552,NBRC 104580

@ref 20215

Last LPSN update 2026-02-09 11:19:29

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Herbiconiux

Species Herbiconiux ginsengi

Full scientific name Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011

Synonyms (1)

Leifsonia ginsengi

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31841	positive	1.85 µm	0.7 µm	rod-shaped
119624	positive			rod-shaped
125438	positive				90.703
125439	positive				98.7

Pigmentation

31841

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7880	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37649	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119624	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7880	positive	growth	28
31841	positive	growth	04-37
31841	positive	optimum	28
37649	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31841	aerobe
119624	obligate aerobe
125438	aerobe	91.522
125439	obligate aerobe	92.3

Spore formation

31841

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31841	NaCl	positive	growth	<3 %
31841	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: MK-11, MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31841	62064 ChEBI	2,3-butanediol	+	carbon source
31841	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
31841	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
31841	17057 ChEBI	cellobiose	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
31841	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31841	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31841	17234 ChEBI	glucose	+	carbon source
31841	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31841	17306 ChEBI	maltose	+	carbon source
31841	29864 ChEBI	mannitol	+	carbon source
31841	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
31841	51850 ChEBI	methyl pyruvate	+	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
119624	17632 ChEBI	nitrate	-	reduction
119624	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31841	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31841	33942 ChEBI	ribose	+	carbon source
31841	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31841	17992 ChEBI	sucrose	+	carbon source
31841	17748 ChEBI	thymidine	+	carbon source
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
31841	53423 ChEBI	tween 40	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31841	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite
31841	16136 ChEBI	hydrogen sulfide
31841	35581 ChEBI	indole
119624	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
31841	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31841	catalase	+	1.11.1.6
119624	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119624	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
119624	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	gallate degradation	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	lipoate biosynthesis	100	5 of 5
66794	starch degradation	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	photosynthesis	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	tryptophan metabolism	84.21	32 of 38
66794	degradation of sugar acids	84	21 of 25
66794	NAD metabolism	83.33	15 of 18
66794	metabolism of disaccharids	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	phenol degradation	80	16 of 20
66794	3-chlorocatechol degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	histidine metabolism	75.86	22 of 29
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	degradation of hexoses	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	degradation of sugar alcohols	68.75	11 of 16
66794	oxidative phosphorylation	68.13	62 of 91
66794	degradation of pentoses	67.86	19 of 28
66794	enterobactin biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	sulfoquinovose degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	d-xylose degradation	63.64	7 of 11
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	non-pathway related	60.53	23 of 38
66794	3-phenylpropionate degradation	60	9 of 15
66794	creatinine degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	ascorbate metabolism	54.55	12 of 22
66794	arginine metabolism	54.17	13 of 24
66794	bile acid biosynthesis, neutral pathway	52.94	9 of 17
66794	lysine metabolism	52.38	22 of 42
66794	cyclohexanol degradation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	suberin monomers biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	carotenoid biosynthesis	50	11 of 22
66794	myo-inositol biosynthesis	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	carnitine metabolism	50	4 of 8
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	arachidonic acid metabolism	44.44	8 of 18
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	vitamin B6 metabolism	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	nitrate assimilation	33.33	3 of 9
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	sulfate reduction	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119624	-	-	+	-	-	+	+	+	+	-	+	-	-	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119624	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	+/-	+/-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7880	tissue of surface sterilized ginseng root	Fusong county, Jilin Province	China	CHN	Asia
67770	Ginseng root	Fusong country, Jilin Province	China	CHN	Asia
119624	Plant, Ginseng root		China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7880	1	Risk group (German classification) According to TRBA 466
119624	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2667527392 annotated assembly for Herbiconiux ginsengi CGMCC 4.3491	scaffold	GCA_900107435	381665.4	2667527392	381665	74.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7880	Leifsonia ginsengi strain wged11 16S ribosomal RNA gene, partial sequence	DQ473536	1485		381665

GC content

@ref	GC-content (mol%)	Method
7880	66.4
67770	66.4	thermal denaturation, midpoint method (Tm)
67770	68.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Herbiconiux ginsengi CGMCC 4.3491
NCBI: GCA_900107435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	50.20	no
125439	motility	BacteriaNetⓘ	no	78.60	no
125439	gram_stain	BacteriaNetⓘ	positive	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Herbiconiux ginsengi strain CGMCC 4.3491
PATRIC: 381665.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.70	no
125438	anaerobic	anaerobicⓘ	no	98.33	yes
125438	spore-forming	spore-formingⓘ	no	73.27	yes
125438	aerobic	aerobicⓘ	yes	91.52	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacterial synergies amplify nitrogenase activity in diverse systems.	Sher AW, Tournay RJ, Gomez-Rivas E, Doty SL.	ISME Commun	10.1093/ismeco/ycae158	2024
Phylogeny	Protaetiibacter intestinalis gen. nov., of the family Microbacteriaceae, isolated from gut of Protaetia brevitarsis seulensis, reclassification of Lysinimonas kribbensis Jang et al. 2013 as Pseudolysinimonas kribbensis gen. nov., comb. nov. and emended description of the genus Lysinimonas Jang et al. 2013.	Heo J, Cho H, Kim MA, Hamada M, Tamura T, Saitou S, Kim SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003444	2019
Phylogeny	Description of Herbiconiux flava sp. nov. and emended description of the genus Herbiconiux.	Hamada M, Komukai C, Tamura T, Evtushenko LI, Vinokurova NG, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.031260-0	2011
Phylogeny	Herbiconiux moechotypicola sp. nov., a xylanolytic bacterium isolated from the gut of hairy long-horned toad beetles, Moechotypa diphysis (Pascoe).	Kim BC, Park DS, Kim H, Oh HW, Lee KH, Shin KS, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.028357-0	2011
Phylogeny	Reclassification of Leifsonia ginsengi (Qiu et al. 2007) as Herbiconiux ginsengi gen. nov., comb. nov. and description of Herbiconiux solani sp. nov., an actinobacterium associated with the phyllosphere of Solanum tuberosum L.	Behrendt U, Schumann P, Hamada M, Suzuki KI, Sproer C, Ulrich A	Int J Syst Evol Microbiol	10.1099/ijs.0.021352-0	2010
Phylogeny	Amnibacterium kyonggiense gen. nov., sp. nov., a new member of the family Microbacteriaceae.	Kim SJ, Lee SS	Int J Syst Evol Microbiol	10.1099/ijs.0.018788-0	2010
Phylogeny	Leifsonia ginsengi sp. nov., isolated from ginseng root.	Qiu F, Huang Y, Sun L, Zhang X, Liu Z, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.64487-0	2007

References

#7880	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19088
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28107	IJSEM 405 2007 ( DOI 10.1099/ijs.0.64487-0 , PubMed 17267987 )
#31841	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28107
#37649	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#119624	Collection of Institut Pasteur ; Curators of the CIP; CIP 109552
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Herbiconiux ginsengi (DSM 19088, CGMCC 4.3491, JCM 13908)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900107435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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