Name: Schumannella luteola KHIA
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7501

Type strain:

Species: Schumannella luteola

Strain Designation: KHIA

Culture col. no.: DSM 23141, IAM 15435, JCM 23215, TISTR 1824

Strain history: IAM 15435 <-- S.-Y. An strain KHIA.

NCBI tax ID(s): 472059 (species)

SI-ID 404033

DSM 23141

Section

Schumannella luteola KHIA is a mesophilic bacterium that was isolated from lichen.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Schumannella*
	Species	**Schumannella luteola**
	Full Scientific Name (LPSN)	Schumannella luteola An et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.375

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16726]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16726]

Culture medium growth

[Ref.: #16726]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16726]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16726]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16726]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %91
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.59

[Ref.: #67770]

Observation

quinones: MK-11 (59%), MK-10 (28%), MK-9 (13%)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16726]	Sample type/isolated from	lichen
[Ref.: #16726]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #16726]	Country	Japan
[Ref.: #16726]	Country ISO 3 Code	JPN
[Ref.: #16726]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Lichen
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Other

#Lichen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16726]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16726]	Schumannella luteola gene for 16S ribosomal RNA, partial sequence	AB362159	1466	ENA	472059 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Schumannella luteola DSM 23141	GCA_013408685	contig	GenBank	472059 tax ID
[Ref.: #66792]	Schumannella luteola KHIA	GCA_006517455	scaffold	GenBank	472059 tax ID	*
[Ref.: #66792]	Schumannella luteola strain DSM 23141	472059.4	wgs	PATRIC	472059 tax ID	*
[Ref.: #66792]	Schumannella luteola DSM 23141	2844605367	draft	JGI IMG/M	472059 tax ID	*

[Ref.: #16726]

GC-content

58.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Schumannella luteola strain DSM 23141 PATRIC: 472059.3
[Ref.: #69481]	spore-forming	no	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Schumannella luteola KHIA NCBI: GCA_006517455.1
[Ref.: #69480]	motile	no	88.33	no
[Ref.: #69480]	flagellated	no	97.202	no
[Ref.: #69480]	gram-positive	yes	88.79	no
[Ref.: #69480]	anaerobic	no	98.971	no
[Ref.: #69480]	aerobic	yes	93.515	no
[Ref.: #69480]	halophile	no	93.113	no
[Ref.: #69480]	spore-forming	no	90.756	no
[Ref.: #69480]	thermophile	no	99.629	yes
[Ref.: #69480]	glucose-util	yes	85.525	no
[Ref.: #69480]	glucose-ferment	no	90.868	no

Availability in culture collections External links

[Ref.: #16726]

Culture collection no.

DSM 23141, IAM 15435, JCM 23215, TISTR 1824

[Ref.: #76947]

SI-ID 404033

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation.	Li F, Lu Q, Liao S, Tuo L, Liu S, Yang Q, Shen A, Sun C	Antonie Van Leeuwenhoek	10.1007/s10482-021-01631-6	2021	*
Phylogeny	Schumannella luteola gen. nov., sp. nov., a novel genus of the family Microbacteriaceae.	An SY, Xiao T, Yokota A	J Gen Appl Microbiol	10.2323/jgam.54.253	2008	*

References

#16726

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23141

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76947

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404033.1 )

* These data were automatically processed and therefore are not curated

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Schumannella luteola strain DSM 23141

Schumannella luteola KHIA

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