Microbacterium indicum BBH6 | Type strain | DSM 19969, CIP 109607, IAM 15355, JCM 21800, LMG 23459

Strain identifier

BacDive ID: 7434

Type strain:

Species: Microbacterium indicum

Strain Designation: BBH6

Culture col. no.: DSM 19969, CIP 109607, IAM 15355, JCM 21800, LMG 23459

Strain history: 2007, S. Shivaji; CCMB, Hyderabad, India: strain BBH6

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Microbacterium indicum BBH6 is a mesophilic, gram-positive, rod-shaped bacterium that was isolated from deep sea sediment.

gram-positive
rod-shaped
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Micrococcales
	Family	Microbacteriaceae
	Genus	Microbacterium
	Species	Microbacterium indicum
	Full Scientific Name (PNU)	Microbacterium indicum Shivaji et al. 2007

Information on morphological and physiological propertiesMorphology

[Ref.: #31998]	Gram stain	positive
[Ref.: #31998]	Cell shape	rod-shaped

[Ref.: #31998]

Pigment production

yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8414]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8414]

Culture medium growth

[Ref.: #8414]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #37787]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37787]

Culture medium growth

[Ref.: #37787]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8414]	growth	28 ̊C
[Ref.: #31998]	growth	08-30 ̊C
[Ref.: #31998]	optimum	22 ̊C
[Ref.: #37787]	growth	25 ̊C

[Ref.: #8414]	Temperature range	mesophilic
[Ref.: #31998]	Temperature range	psychrophilic
[Ref.: #37787]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31998]			optimum	7
[Ref.: #31998]			growth	05-09

Information on physiology and metabolismPhysiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31998]		NaCl		growth	<6	%

[Ref.: #8414]	Murein short key	B06
[Ref.: #8414]	Murein types	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31998]	acetate ChEBI	+	carbon source
[Ref.: #31998]	arabinose ChEBI	+	carbon source
[Ref.: #31998]	arginine ChEBI	+	carbon source
[Ref.: #31998]	asparagine ChEBI	+	carbon source
[Ref.: #31998]	cellobiose ChEBI	+	carbon source
[Ref.: #31998]	esculin ChEBI	+	hydrolysis
[Ref.: #31998]	fructose ChEBI	+	carbon source
[Ref.: #31998]	glucose ChEBI	+	carbon source
[Ref.: #31998]	lactose ChEBI	+	carbon source
[Ref.: #31998]	malonate ChEBI	+	carbon source
[Ref.: #31998]	maltose ChEBI	+	carbon source
[Ref.: #31998]	mannitol ChEBI	+	carbon source
[Ref.: #31998]	nitrate ChEBI	+	reduction
[Ref.: #31998]	raffinose ChEBI	+	carbon source
[Ref.: #31998]	ribose ChEBI	+	carbon source
[Ref.: #31998]	serine ChEBI	+	carbon source
[Ref.: #31998]	sucrose ChEBI	+	carbon source
[Ref.: #31998]	trehalose ChEBI	+	carbon source
[Ref.: #31998]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8414]	Sample type/isolated from	deep sea sediment
[Ref.: #8414]	Geographic location (country and/or sea, region)	Indian Ocean, Chagos Trench
[Ref.: #8414]	Country	India
[Ref.: #8414]	Country ISO 3 Code	IND
[Ref.: #8414]	Continent	Asia

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #8414]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium indicum DSM 19969	GCA_000422385	scaffold	GenBank	1122238 tax ID
[Ref.: #66792]	Microbacterium indicum DSM 19969	1122238.3	wgs	PATRIC	1122238 tax ID
[Ref.: #66792]	Microbacterium indicum DSM 19969	2523533558	permanent	JGI IMG/M	1122238 tax ID

[Ref.: #8414]

GC-content

65.5 mol%

Availability in culture collectionsExternal links

[Ref.: #8414]

Culture collection no.

DSM 19969, CIP 109607, IAM 15355, JCM 21800, LMG 23459

[Ref.: #20218]

Associated Passport(s) in StrainInfo

766312, 900234, 720767, 721067, 675257

References

#8414

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19969

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31998

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28252 (see below)

#37787 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28252

IJSEM 1819 2007 ( DOI 10.1099/ijs.0.64782-0 )

* These References are textmined

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