Name: Microbacterium indicum BBH6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7434

Type strain:

Species: Microbacterium indicum

Strain Designation: BBH6

Culture col. no.: DSM 19969, CIP 109607, IAM 15355, JCM 21800, LMG 23459

Strain history: IAM 15355 <-- S. Shivaji BBH6.

NCBI tax ID(s): 1122238 (strain), 358100 (species)

Section

Microbacterium indicum BBH6 is a Gram-positive, rod-shaped bacterium that was isolated from deep sea sediment.

Gram-positive
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium indicum**
	Full Scientific Name (PNU)	Microbacterium indicum Shivaji et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31998]	Gram stain	positive
[Ref.: #31998]	Cell shape	rod-shaped

[Ref.: #31998]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37787]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37787]

Culture medium growth

[Ref.: #37787]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #31998]	growth	08-30 °C
[Ref.: #31998]	optimum	22 °C
[Ref.: #37787]	growth	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #31998]	Temperature range	psychrophilic
[Ref.: #37787]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #31998]			optimum	7
[Ref.: #31998]			growth	05-09	alkaliphile

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31998]		NaCl		growth	<6	%

[Ref.: #8414]	Murein short key	B06
[Ref.: #8414]	Murein types	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

[Ref.: #67770]

Observation

quinones: MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31998]	acetate ChEBI	+	carbon source
[Ref.: #31998]	arabinose ChEBI	+	carbon source
[Ref.: #31998]	arginine ChEBI	+	carbon source
[Ref.: #31998]	asparagine ChEBI	+	carbon source
[Ref.: #31998]	cellobiose ChEBI	+	carbon source
[Ref.: #31998]	esculin ChEBI	+	hydrolysis
[Ref.: #31998]	fructose ChEBI	+	carbon source
[Ref.: #31998]	glucose ChEBI	+	carbon source
[Ref.: #31998]	lactose ChEBI	+	carbon source
[Ref.: #31998]	malonate ChEBI	+	carbon source
[Ref.: #31998]	maltose ChEBI	+	carbon source
[Ref.: #31998]	mannitol ChEBI	+	carbon source
[Ref.: #31998]	nitrate ChEBI	+	reduction
[Ref.: #31998]	raffinose ChEBI	+	carbon source
[Ref.: #31998]	ribose ChEBI	+	carbon source
[Ref.: #31998]	serine ChEBI	+	carbon source
[Ref.: #31998]	sucrose ChEBI	+	carbon source
[Ref.: #31998]	trehalose ChEBI	+	carbon source
[Ref.: #31998]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8414]	Sample type/isolated from	deep sea sediment
[Ref.: #8414]	Geographic location (country and/or sea, region)	Indian Ocean, Chagos Trench
[Ref.: #8414]	Country	India
[Ref.: #8414]	Country ISO 3 Code	IND
[Ref.: #8414]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment at a water depth of 5,904 m
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chagos Trench
[Ref.: #67770]	Country	Indian Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8414]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium indicum partial rRNA gene, type strain BBH6T	AM158907	1450	ENA	358100 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium indicum DSM 19969	1122238.3	wgs	PATRIC	1122238 tax ID	*
[Ref.: #66792]	Microbacterium indicum DSM 19969	2523533558	draft	JGI IMG/M	1122238 tax ID	*
[Ref.: #67770]	Microbacterium indicum DSM 19969 DSM 19969	GCA_000422385	scaffold	GenBank	1122238 tax ID
[Ref.: #66792]	uncultured beta proteobacterium MJ-2014-D2_bin-0649	GCA_903896345	contig	PATRIC	86027 tax ID	*

[Ref.: #8414]	GC-content	65.5 mol%
[Ref.: #67770]	GC-content	65.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	71.4 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #8414]

Culture collection no.

DSM 19969, CIP 109607, IAM 15355, JCM 21800, LMG 23459

[Ref.: #20218]

Associated Passport(s) in StrainInfo

766312, 900234, 720767, 721067, 675257

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium indicum sp. nov., isolated from a deep-sea sediment sample from the Chagos Trench, Indian Ocean.	Shivaji S, Bhadra B, Rao RS, Chaturvedi P, Pindi PK, Raghukumar C	Int J Syst Evol Microbiol	10.1099/ijs.0.64782-0	2007	*
Phylogeny	Microbacterium amylolyticum sp. nov., isolated from soil from an industrial waste site.	Anand S, Bala K, Saxena A, Schumann P, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.034439-0	2011	*

References

#8414

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19969

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31998

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28252 (see below)

#37787 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28252

IJSEM 1819 2007 ( DOI 10.1099/ijs.0.64782-0 , PubMed 17684264 )

* These data were automatically processed and therefore are not curated

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