Name: Microbacterium ulmi XIL02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7424

Type strain:

Species: Microbacterium ulmi

Strain Designation: XIL02

Culture col. no.: DSM 16931, CECT 5976, LMG 20991, JCM 14282, CIP 108339, IAM 15295, NCAIM B.02300, NCIMB 14309

Strain history: CIP <- 2004, CECT <- E. Velaquez, Salamance, Spain: strain XIL02

NCBI tax ID(s): 179095 (species)

SI-ID 85132

LMG 20991, CECT 5976, CIP 108339, DSM 16931, JCM 14282, IAM 15295

Section

Microbacterium ulmi XIL02 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from decayed wood .

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium ulmi**
	Full Scientific Name (LPSN)	Microbacterium ulmi Rivas et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29943]	Gram stain	positive
[Ref.: #123715]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29943]	Cell shape	rod-shaped
[Ref.: #123715]	Cell shape	rod-shaped

[Ref.: #29943]	Motility	no
[Ref.: #123715]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.879

[Ref.: #29943]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6651]

Culture medium

XED-AGAR (DSMZ Medium 1026)

[Ref.: #6651]

Culture medium growth

[Ref.: #6651]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6651]

Culture medium composition

expand / minimize

[Ref.: #6651]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6651]

Culture medium growth

[Ref.: #6651]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6651]

Culture medium composition

expand / minimize

[Ref.: #38270]

Culture medium

MEDIUM 594 - for Microbacterium ulmi

[Ref.: #38270]

Culture medium growth

[Ref.: #38270]

Culture medium composition

expand / minimize

[Ref.: #123715]

Culture medium

CIP Medium 594

[Ref.: #123715]

Culture medium growth

[Ref.: #123715]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6651]		growth	28 °C
[Ref.: #29943]		growth	15-37 °C
[Ref.: #38270]		growth	25 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #123715]		growth	15-37 °C
[Ref.: #123715]	no	growth	10 °C
[Ref.: #123715]	no	growth	41 °C
[Ref.: #123715]	no	growth	45 °C

[Ref.: #6651]	Temperature range	mesophilic
[Ref.: #38270]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123715]	Temperature range	psychrophilic
[Ref.: #123715]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29943]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29943]	Oxygen tolerance	aerobe
[Ref.: #123715]	Oxygen tolerance	obligate aerobe

[Ref.: #29943]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.966

	Salt	Tested relation		Salt conc.
[Ref.: #123715]	NaCl		growth	0-2	%
[Ref.: #123715]	NaCl	no	growth	4	%
[Ref.: #123715]	NaCl	no	growth	6	%
[Ref.: #123715]	NaCl	no	growth	8	%
[Ref.: #123715]	NaCl	no	growth	10	%

[Ref.: #6651]	Murein short key	B02
[Ref.: #6651]	Murein types	B1ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly₂-L-Lys

[Ref.: #67770]

Observation

quinones: MK-12, MK-13

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29943]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29943]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123715]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29943]	esculin ChEBI	+	hydrolysis
[Ref.: #123715]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29943]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123715]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29943]	maltose ChEBI	+	carbon source
[Ref.: #29943]	mannitol ChEBI	+	carbon source
[Ref.: #29943]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123715]	nitrate ChEBI	-	reduction
[Ref.: #123715]	nitrate ChEBI	-	respiration
[Ref.: #123715]	nitrite ChEBI	-	reduction
[Ref.: #29943]	phenylacetate ChEBI	+	carbon source
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123715]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123715]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123715]		acetoin ChEBI	-
[Ref.: #123715]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123715]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123715]	amylase	+
[Ref.: #123715]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123715]	caseinase	-	3.4.21.50
[Ref.: #123715]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123715]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #123715]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #29943]	gelatinase	+
[Ref.: #123715]	gelatinase	-
[Ref.: #123715]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123715]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123715]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123715]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123715]	oxidase	+
[Ref.: #123715]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123715]	tryptophan deaminase	-
[Ref.: #123715]	tween esterase	-
[Ref.: #123715]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123715]	11271	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	+	+/-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123715]	2710	not determinedn.d.	+	+	-	+	+	-	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123715]	11103	-	+	+	-	-	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6651]	Sample type/isolated from	decayed wood (Ulmus nigra)
[Ref.: #6651]	Host species	Ulmus nigra
[Ref.: #6651]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #6651]	Country	Spain
[Ref.: #6651]	Country ISO 3 Code	ESP
[Ref.: #6651]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sawdust from a decade tree Ulmus nigra
[Ref.: #67770]	Host species	Ulmus nigra

[Ref.: #123715]	Sample type/isolated from	Sawdust of Ulmus nigra
[Ref.: #123715]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #123715]	Country	Spain
[Ref.: #123715]	Country ISO 3 Code	ESP
[Ref.: #123715]	Continent	Europe
[Ref.: #123715]	Isolation date	2001
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Host	#Plants	#Tree
#Host Body Product	#Plant	#Timber

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6651]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123715]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6651]	Microbacterium ulmi strain XIL02 16S ribosomal RNA gene, complete sequence	AY062021	1517	ENA	179095 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium ulmi CECT 5976	GCA_011759705	scaffold	GenBank	179095 tax ID
[Ref.: #67770]	Microbacterium ulmi JCM 14282	GCA_013004565	contig	GenBank	179095 tax ID
[Ref.: #66792]	Microbacterium ulmi strain CECT 5976	179095.3	wgs	PATRIC	179095 tax ID	*
[Ref.: #66792]	Microbacterium ulmi strain JCM 14282	179095.4	wgs	PATRIC	179095 tax ID	*
[Ref.: #66792]	Microbacterium ulmi CECT 5976	2824374264	draft	JGI IMG/M	179095 tax ID	*

[Ref.: #6651]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium ulmi CECT 5976 NCBI: GCA_011759705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium ulmi strain CECT 5976 PATRIC: 179095.3
[Ref.: #69480]	motile	no	92.379	yes
[Ref.: #69480]	gram-positive	yes	91.695	yes
[Ref.: #69480]	anaerobic	no	99.455	yes
[Ref.: #69480]	aerobic	yes	89.226	no
[Ref.: #69480]	halophile	no	91.08	no
[Ref.: #69480]	spore-forming	no	90.513	yes
[Ref.: #69480]	glucose-util	yes	86.938	no
[Ref.: #69480]	flagellated	no	97.978	yes
[Ref.: #69480]	thermophile	no	96.149	yes
[Ref.: #69480]	glucose-ferment	no	89.827	no

Availability in culture collections External links

[Ref.: #6651]

Culture collection no.

DSM 16931, CECT 5976, LMG 20991, JCM 14282, CIP 108339, IAM 15295, NCAIM B.02300, NCIMB 14309

[Ref.: #76873]

SI-ID 85132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium immunditiarum sp. nov., an actinobacterium isolated from landfill surface soil, and emended description of the genus Microbacterium.	Krishnamurthi S, Bhattacharya A, Schumann P, Dastager SG, Tang SK, Li WJ, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.033373-0	2011	*
Phylogeny	Microbacterium kribbense sp. nov., isolated from soil.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001222-0	2008	*
Phylogeny	Microbacterium paludicola sp. nov., a novel xylanolytic bacterium isolated from swamp forest.	Park HY, Kim KK, Jin L, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63945-0	2006	*
Phylogeny	Microbacterium ulmi sp. nov., a xylanolytic, phosphate-solubilizing bacterium isolated from sawdust of Ulmus nigra.	Rivas R, Trujillo ME, Sanchez M, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.02724-0	2004	*

References

#6651

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16931

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29943

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26312 (see below)

#38270 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76873

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID85132.1 )

#123715 Collection of Institut Pasteur ; Curators of the CIP; CIP 108339

#26312

IJSEM 513 2004 ( DOI 10.1099/ijs.0.02724-0 , PubMed 15023968 )

* These data were automatically processed and therefore are not curated

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Microbacterium ulmi CECT 5976

Microbacterium ulmi strain CECT 5976

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