Name: Microbacterium arabinogalactanolyticum M-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7401

Type strain:

Species: Microbacterium arabinogalactanolyticum

Strain Designation: M-2

Culture col. no.: DSM 8611, CCM 4370, CIP 103814, IFO 14344, NBRC 14344, NRRL B-24215, JCM 9171, ATCC 51926, IAM 15200, LMG 16469, VKM Ac-1943

Strain history: IFO 14344 <-- A. Misaki <-- S. Kotani M-2.

NCBI tax ID(s): 69365 (species)

Other strains from Microbacterium arabinogalactanolyticum

M. arabinogalactanolyticum ST033249(HKI),

Section

Microbacterium arabinogalactanolyticum M-2 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium arabinogalactanolyticum**
	Full Scientific Name (PNU)	Microbacterium arabinogalactanolyticum (Yokota et al. 1993) Takeuchi and Hatano 1998

Synonym

Aureobacterium arabinogalactanolyticum

Information on morphological and physiological properties Morphology

[Ref.: #19734]	Colony color	Beige
[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 2

[Ref.: #19734]	Colony color	Beige
[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 3

[Ref.: #19734]	Colony color	Beige
[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 4

[Ref.: #19734]	Colony color	beige
[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 7

[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 5

[Ref.: #19734]	Incubation period	10-14 days
[Ref.: #19734]	Cultivation medium used	ISP 6

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 2

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 3

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 4

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 5

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 6

[Ref.: #19734]	Multicellular complex forming ability	no
[Ref.: #19734]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3333]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19734]

Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #38149]

Culture medium

MEDIUM 3 - Columbia agar

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #3333]	growth	30 °C
[Ref.: #19734]	optimum	28 °C
[Ref.: #38149]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #3333]	Temperature range	mesophilic
[Ref.: #19734]	Temperature range	mesophilic
[Ref.: #38149]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3333]

Name of produced compound

alpha-D arabinofuranidase

[Ref.: #3333]	Murein short key	B06
[Ref.: #3333]	Murein types	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

[Ref.: #67770]

Observation

quinones: MK-12, MK-13

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #67770]	alpha-L-arabinofuranosidase		3.2.1.55
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19734]	279	+	-	+	+	-	+	+	+	+	+	-	not determinedn.d.	+	-	-	-	+	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19734]	558	not determinedn.d.	+	-	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3333]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3333]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19734]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Microbacterium arabinogalactanolyticum 16S rRNA gene	Y17228	1462	ENA	69365 tax ID	*
[Ref.: #20218]	Microbacterium arabinogalactanolyticum gene for 16S rRNA, partial sequence	AB004715	1447	ENA	69365 tax ID	*

[Ref.: #3333]	GC-content	69 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	69.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3333]

Culture collection no.

DSM 8611, CCM 4370, CIP 103814, IFO 14344, NBRC 14344, NRRL B-24215, JCM 9171, ATCC 51926, IAM 15200, LMG 16469, VKM Ac-1943

[Ref.: #20218]

Associated Passport(s) in StrainInfo

152668, 33474, 33475, 33476, 335714, 684851

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of six new species in the genus Aureobacterium and transfer of Flavobacterium esteraromaticum Omelianski to the genus Aureobacterium as Aureobacterium esteraromaticum comb. nov.	Yokota A, Takeuchi M, Sakane T, Weiss N	Int J Syst Bacteriol	10.1099/00207713-43-3-555	1993	*

References

#3333

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8611

#19734

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38149 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

* These data were automatically processed and therefore are not curated

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