Leucobacter chromiireducens subsp. chromiireducens L-1 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from Activated sludge.
Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Microbacteriaceae |
| Genus Leucobacter |
| Species Leucobacter chromiireducens subsp. chromiireducens |
| Full scientific name Leucobacter chromiireducens subsp. chromiireducens (Morais et al. 2005) Muir and Tan 2007 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6938 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 34487 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 118259 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 6938 | B11 | B2delta {Gly} [L-Ala] D-Glu-D-Dab-L-Thr |
| 67770 | Observationquinones: MK-11 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 118259 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 118259 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 118259 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 118259 | 17632 ChEBI | nitrate | - | reduction | |
| 118259 | 17632 ChEBI | nitrate | - | respiration | |
| 118259 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118259 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118259 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118259 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118259 | caseinase | - | 3.4.21.50 | |
| 118259 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 118259 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118259 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 118259 | gelatinase | - | ||
| 118259 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 118259 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 118259 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118259 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118259 | oxidase | - | ||
| 118259 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118259 | tryptophan deaminase | - | ||
| 118259 | tween esterase | - | ||
| 118259 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118259 | not determinedn.d. | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | Isolation date | |
|---|---|---|---|---|---|---|---|---|---|---|
| 6938 | Activated sludge | Coimbra | Portugal | PRT | Europe | |||||
| 67770 | Activated sludge of a treatment plant receiving chromium-contaminated wastewater from the tannery industry | |||||||||
| 67772 | Activated sludge of a treatment plant that receives wastewater from the tannery industry contaminated with chromium | 1997 | Ribatejo, Alcanena | Portugal | PRT | Europe | 39.4667 | -8.66667 39.4667/-8.66667 | ||
| 118259 | Environment, Activated sludge | Portugal | PRT | Europe | 2000 |
Global distribution of 16S sequence AJ781046 (>99% sequence identity) for Leucobacter chromiireducens subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1675825v1 assembly for Leucobacter chromiireducens subsp. chromiireducens L-1 | contig | 660067 | 63.44 | ||||
| 67772 | ASM391713v1 assembly for Leucobacter chromiireducens LYC-2 | scaffold | 283877 | 48.08 | ||||
| 124043 | ASM3952881v1 assembly for Leucobacter chromiireducens subsp. chromiireducens JCM 13322 | scaffold | 660067 | 37.39 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67772 | Leucobacter chromiireducens subsp. chromiireducens partial 16S rRNA gene, type strain L-1T | AJ781046 | 1516 | 660067 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 90.15 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 66.70 | no |
| 125439 | motility | BacteriaNetⓘ | no | 65.69 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.80 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.47 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 84.12 | no |
| 125438 | aerobic | aerobicⓘ | yes | 82.68 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 95.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Boron-dependent autoinducer-2-mediated quorum sensing stimulates the Cr(VI) reduction of Leucobacter chromiireducens CD49. | Xie X, Yin S, Zhang X, Tian Q, Zeng Y, Zhang X. | J Environ Manage | 10.1016/j.jenvman.2025.124290 | 2025 | ||
| Fecal Microbiome Analysis Distinguishes Bacterial Taxa Biomarkers Associated with Red Fillet Color in Rainbow Trout. | Ahmed RO, Ali A, Leeds T, Salem M. | Microorganisms | 10.3390/microorganisms11112704 | 2023 | ||
| Pathogenicity | Genome Sequencing of the Antibiotic-Resistant Leucobacter sp. HNU-1 and Its Developmental Toxicity in Caenorhabditis elegans. | Ju J, Lu X, Gao Z, Yin H, Xu S, Li H. | Int J Mol Sci | 10.3390/ijms26083673 | 2025 | |
| Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species. | Bharti M, Nagar S, Khurana H, Negi RK. | Arch Microbiol | 10.1007/s00203-022-03127-x | 2022 | ||
| Fecal Microbiome Analysis Distinguishes Bacterial Taxa Biomarkers Associated with Red Fillet Color in Rainbow Trout | Ahmed R, Ali A, Leeds T, Salem M. | Microorganisms | 2023 | |||
| Phylogeny | Diverse plant promoting bacterial species differentially improve tomato plant fitness under water stress. | Zampieri E, Franchi E, Giovannini L, Brescia F, Sillo F, Fusini D, Pietrini I, Centritto M, Balestrini R. | Front Plant Sci | 10.3389/fpls.2023.1297090 | 2023 | |
| Phylogeny | Riverine pollution influences the intraspecific variation in the gut microbiome of an invasive fish, Cyprinus carpio (Linn., 1758). | Bharti M, Nagar S, Negi RK. | 3 Biotech | 10.1007/s13205-023-03747-0 | 2023 | |
| Pathogenicity | Virulence of Leucobacter chromiireducens subsp. solipictus to Caenorhabditis elegans: characterization of a novel host-pathogen interaction. | Muir RE, Tan MW. | Appl Environ Microbiol | 10.1128/aem.00381-08 | 2008 | |
| Phylogeny | Dynamics of bacterial and archaeal communities during horse bedding and green waste composting. | Grenier V, Gonzalez E, Brereton NJ, Pitre FE. | PeerJ | 10.7717/peerj.15239 | 2023 | |
| Phylogeny | Cultivation-dependent assessment, diversity, and ecology of haloalkaliphilic bacteria in arid saline systems of southern Tunisia. | El Hidri D, Guesmi A, Najjari A, Cherif H, Ettoumi B, Hamdi C, Boudabous A, Cherif A. | Biomed Res Int | 10.1155/2013/648141 | 2013 | |
| Bioactivity of nanosilver in Caenorhabditis elegans: Effects of size, coat, and shape. | Hunt PR, Keltner Z, Gao X, Oldenburg SJ, Bushana P, Olejnik N, Sprando RL. | Toxicol Rep | 10.1016/j.toxrep.2014.10.020 | 2014 | ||
| Pathogenicity | Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptides. | Pujol N, Zugasti O, Wong D, Couillault C, Kurz CL, Schulenburg H, Ewbank JJ. | PLoS Pathog | 10.1371/journal.ppat.1000105 | 2008 | |
| Phylogeny | Leucobacter chinensis sp. nov., with plant growth-promoting potential isolated from field soil after seven-years continuous maize cropping. | Zhu J, Che J, Jiang X, Ma M, Guan D, Li L, Cao F, Zhao B, Kang Y, Zhao J, Kong D, Zhou Y, Ruan Z, Li J. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005417 | 2022 | |
| Phylogeny | Leucobacter chromiireducens sp. nov, and Leucobacter aridicollis sp. nov., two new species isolated from a chromium contaminated environment. | Morais PV, Francisco R, Branco R, Chung AP, da Costa MS. | Syst Appl Microbiol | 10.1078/0723202042369983 | 2004 | |
| Phylogeny | Leucobacter chromiireducens subsp. solipictus subsp. nov., a pigmented bacterium isolated from the nematode Caenorhabditis elegans, and emended description of L. chromiireducens. | Muir RE, Tan MW | Int J Syst Evol Microbiol | 10.1099/ijs.0.64822-0 | 2007 | |
| Phylogeny | Leucobacter iarius sp. nov., in the family Microbacteriaceae. | Somvanshi VS, Lang E, Schumann P, Pukall R, Kroppenstedt RM, Ganguly S, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.64683-0 | 2007 |
| #6938 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17381 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #34487 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67772 | The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118259 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108389 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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