Name: Leucobacter chromiireducens subsp. solipictus ID 06-074
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7356

Type strain:

Species: Leucobacter chromiireducens subsp. solipictus

Strain Designation: ID 06-074

Culture col. no.: DSM 18340, ATCC BAA-1336, JCM 15573, KCTC 19684, NCIMB 14548

Strain history: DSM 18340 <-- R. E. Muir TAN 31504.

NCBI tax ID(s): 398235 (subspecies)

SI-ID 293708

ATCC BAA-1336, DSM 18340, JCM 15573

Section

Leucobacter chromiireducens subsp. solipictus ID 06-074 is a mesophilic bacterium that was isolated from C. elegans, appeared as a contaminant.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter chromiireducens subsp. solipictus**
	Full Scientific Name (LPSN)	Leucobacter chromiireducens subsp. solipictus Muir and Tan 2007

Information on morphological and physiological properties Morphology

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 2

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 3

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 4

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 5

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 6

[Ref.: #18412]	Colony color	Beige (1001)
[Ref.: #18412]	Incubation period	10-14 days
[Ref.: #18412]	Cultivation medium used	ISP 7

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 2

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 3

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 4

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 5

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 6

[Ref.: #18412]	Multicellular complex forming ability	no
[Ref.: #18412]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7514]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7514]

Culture medium growth

[Ref.: #7514]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7514]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 2

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 3

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 4

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 5

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 6

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

[Ref.: #18412]

Culture medium

ISP 7

[Ref.: #18412]

Culture medium growth

[Ref.: #18412]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7514]	growth	25-28 °C
[Ref.: #18412]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #7514]	Temperature range	mesophilic
[Ref.: #18412]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-11, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18412]	94	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18412]	122	not determinedn.d.	-	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7514]	Sample type/isolated from	C. elegans, appeared as a contaminant
[Ref.: #7514]	Geographic location (country and/or sea, region)	Stanford, California
[Ref.: #7514]	Country	USA
[Ref.: #7514]	Country ISO 3 Code	USA
[Ref.: #7514]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Nematode Caenorhabditis elegans
[Ref.: #67770]	Host species	Caenorhabditis elegans
[Ref.: #67770]	Geographic location (country and/or sea, region)	Stanford, CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Contaminant
#Host	#Invertebrates (Other)	#Nematoda

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ845457 (>99% sequence identity) for Leucobacter chromiireducens subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	61
Animal Samples	113
Plant Samples	29
Total Samples	275

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18412]	Biosafety level	1	German classification
[Ref.: #7514]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7514]	Leucobacter chromiireducens subsp. solipictus strain TAN 31504 16S ribosomal RNA gene, partial sequence	DQ845457	1508	ENA	398235 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leucobacter chromiireducens subsp. solipictus strain TAN 31504	398235.3	wgs	PATRIC	398235 tax ID	*

[Ref.: #7514]	GC-content	69.5 mol%
[Ref.: #67770]	GC-content	69.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leucobacter chromiireducens subsp. solipictus strain TAN 31504 PATRIC: 398235.3
[Ref.: #69480]	gram-positive	yes	90.264	no
[Ref.: #69480]	anaerobic	no	99.405	no
[Ref.: #69480]	halophile	no	65.88	no
[Ref.: #69480]	spore-forming	no	94.72	no
[Ref.: #69480]	glucose-util	yes	73.481	no
[Ref.: #69480]	aerobic	yes	94.798	no
[Ref.: #69480]	motile	no	89.759	no
[Ref.: #69480]	flagellated	no	97.367	no
[Ref.: #69480]	thermophile	no	99.819	yes
[Ref.: #69480]	glucose-ferment	no	93.057	yes

Availability in culture collections External links

[Ref.: #7514]

Culture collection no.

DSM 18340, ATCC BAA-1336, JCM 15573, KCTC 19684, NCIMB 14548

[Ref.: #76806]

SI-ID 293708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A novel pigmented and heavy metal biosorptive bacterium, Leucobacter epilobiisoli sp. nov., isolated from rhizosphere soil of Epilobium hirsutum L.	Hou SY, Wang F, Zhang MY, Cheng J, Zhang YX	Antonie Van Leeuwenhoek	10.1007/s10482-018-1071-3	2018	*
Phylogeny	Leucobacter chromiireducens subsp. solipictus subsp. nov., a pigmented bacterium isolated from the nematode Caenorhabditis elegans, and emended description of L. chromiireducens.	Muir RE, Tan MW	Int J Syst Evol Microbiol	10.1099/ijs.0.64822-0	2007	*

References

#7514

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18340

#18412

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76806

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293708.1 )

* These data were automatically processed and therefore are not curated

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Leucobacter chromiireducens subsp. solipictus strain TAN 31504

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