Leucobacter alluvii (DSM 18279, CIP 108819, LMG 23117)

Name: Leucobacter alluvii (DSM 18279, CIP 108819, LMG 23117)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7353

Type strain

Strain Designation RB-10

Culture col. no. DSM 18279 CIP 108819 LMG 23117 RB 10 JCM 14919 2 more

NCBI tax ID(s) 340321

Special Collections DSMZ JCM CIP UCCCB

History <- CIP 2005, P. Morais, Coimbra Univ., Coimbra, Portugal: strain RB10 LMG 23117 <-- P. V. Morais RB10 <-- R. Branco. Branco, R. University of Coimbra CIP <- 2005, P. Morais, Coimbra Univ., Coimbra, Portugal: strain RB10

Links

Leucobacter alluvii RB-10 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from activated sludge, chromium polluted wastewater.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 139546

LMG 23117,CIP 108819,DSM 18279,JCM 14919

@ref 20215

Last LPSN update 2026-02-09 11:19:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Leucobacter

Species Leucobacter alluvii

Full scientific name Leucobacter alluvii Morais et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116260	positive	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7484	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39546	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116260	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7484	positive	growth	28
39546	positive	growth	30
67770	positive	growth	28
67772	positive	optimum	30
116260	positive	growth	30-37

Culture pH

@ref	Ability	Type	PH
67772	positive	optimum	7.0-8.0

Physiology and metabolism

Oxygen tolerance

116260

Oxygen toleranceobligate aerobe

Observation

67770

Observationquinones: MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116260	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116260	17632 ChEBI	nitrate	-	reduction
116260	17632 ChEBI	nitrate	-	respiration
116260	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116260	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
116260	alcohol dehydrogenase	-	1.1.1.1
116260	beta-galactosidase	+	3.2.1.23
116260	catalase	+	1.11.1.6
116260	gelatinase	+
116260	lysine decarboxylase	-	4.1.1.18
116260	ornithine decarboxylase	-	4.1.1.17
116260	oxidase	-
116260	tween esterase	-
116260	urease	-	3.5.1.5

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116260	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Heavy metal
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
7484	activated sludge, chromium polluted wastewater		Alcanena	Portugal	PRT	Europe
67770	River Alviela sediments			Portugal	PRT	Europe
67772	River sediments with 0.3% Cr(VI)	1997	Ribatejo, Alcanena	Portugal	PRT	Europe	39.4667	-8.66667 39.4667/-8.66667
116260	Environment, River sediments with chromium		Alcanena	Portugal	PRT	Europe			2003

Taxonmaps

69479

Global distribution of 16S sequence AM072820 (>99% sequence identity) for Leucobacter from Microbeatlas

Aquatic Samples	43
Soil Samples	137
Animal Samples	392
Plant Samples	88
Total Samples	660

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7484	1	Risk group (German classification) According to TRBA 466
67772	1
116260	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953048v1 assembly for Leucobacter alluvii JCM 14919	scaffold	GCA_039530485	340321	55.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7484	Leucobacter alluvii partial 16S rRNA gene, type strain RB10T	AM072820	1525		340321

GC content

@ref	GC-content (mol%)	Method
7484	68.9
67770	68.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter iarius sp. nov., in the family Microbacteriaceae.	Somvanshi VS, Lang E, Schumann P, Pukall R, Kroppenstedt RM, Ganguly S, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64683-0	2007
Phylogeny	Leucobacter luti sp. nov., and Leucobacter alluvii sp. nov., two new species of the genus Leucobacter isolated under chromium stress.	Morais PV, Paulo C, Francisco R, Branco R, Paula Chung A, da Costa MS	Syst Appl Microbiol	10.1016/j.syapm.2005.10.005	2005

References

#7484	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18279
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39546	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116260	Collection of Institut Pasteur ; Curators of the CIP; CIP 108819
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leucobacter alluvii (DSM 18279, CIP 108819, LMG 23117)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039530485

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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