Name: Gulosibacter chungangensis DSM 26462
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7330

Type strain:

Species: Gulosibacter chungangensis

Culture col. no.: DSM 26462, CAU 9625, CCUG 60841, KCTC 13959

Strain history: <- KCTC; KCTC 13959

NCBI tax ID(s): 979746 (species)

SI-ID 398292

DSM 26462, CCUG 60841

Special Collections

Section

Gulosibacter chungangensis DSM 26462 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from marine sediment.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Gulosibacter*
	Species	**Gulosibacter chungangensis**
	Full Scientific Name (LPSN)	Gulosibacter chungangensis Park et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30277]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.041

[Ref.: #30277]	Cell length	1-1.3 µm

[Ref.: #30277]	Cell width	0.3-0.5 µm

[Ref.: #30277]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #62460]

Incubation period

1 day

[Ref.: #30277]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18229]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18229]

Culture medium growth

[Ref.: #18229]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18229]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18229]	growth	37 °C
[Ref.: #30277]	growth	15-40 °C
[Ref.: #30277]	optimum	37 °C
[Ref.: #62460]	growth	30-37 °C

	pH	Kind of pH		pH
[Ref.: #30277]			optimum	8
[Ref.: #30277]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30277]

Oxygen tolerance

aerobe

[Ref.: #30277]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30277]		NaCl		growth	0-5	%
[Ref.: #30277]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30277]	fructose ChEBI	+	carbon source
[Ref.: #30277]	nitrate ChEBI	+	reduction
[Ref.: #30277]	rhamnose ChEBI	+	carbon source
[Ref.: #30277]	sorbitol ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30277]		catalase	+	1.11.1.6
[Ref.: #30277]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18229]	Sample type/isolated from	marine sediment
[Ref.: #18229]	Geographic location (country and/or sea, region)	Yellow Sea, near Oh Island
[Ref.: #18229]	Country	Republic of Korea
[Ref.: #18229]	Country ISO 3 Code	KOR
[Ref.: #18229]	Continent	Asia

[Ref.: #62460]	Sample type/isolated from	Sediment
[Ref.: #62460]	Sampling date	2009-10-22
[Ref.: #62460]	Geographic location (country and/or sea, region)	Yellow Sea,Oh Island
[Ref.: #62460]	Country	Republic of Korea
[Ref.: #62460]	Country ISO 3 Code	KOR
[Ref.: #62460]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ268603 (>99% sequence identity) for Gulosibacter chungangensis from Microbeatlas

Aquatic Samples	14
Soil Samples	30
Animal Samples	100
Plant Samples	5
Total Samples	149

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18229]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18229]	Gulosibacter chungangensis strain CAU 9625 16S ribosomal RNA gene, partial sequence	HQ268603	1451	GenBank ENA	979746 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gulosibacter chungangensis KCTC 13959	GCA_008831155	contig	GenBank ENA	979746 tax ID	*
[Ref.: #66792]	Gulosibacter chungangensis strain KCTC 13959	979746.3	wgs	PATRIC	979746 tax ID	*

[Ref.: #18229]

GC-content

66.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gulosibacter chungangensis strain KCTC 13959 PATRIC: 979746.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gulosibacter chungangensis strain KCTC 13959 PATRIC: 979746.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.041	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.792	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.53	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.294	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.45	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #18229]

Culture collection no.

DSM 26462, CAU 9625, CCUG 60841, KCTC 13959

[Ref.: #76780]

SI-ID 398292

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gulosibacter macacae sp. nov., a novel actinobacterium isolated from Macaca mulatta faeces.	Li G, Li Q, Chen X, Jiang L, Zhang K, An D, Lang L, Jiang Y, Han L, Huang X, Jiang C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004389	2020	*
Phylogeny	Gulosibacter chungangensis sp. nov., an actinomycete isolated from a marine sediment, and emended description of the genus Gulosibacter.	Park MH, Traiwan J, Jung MY, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.032268-0	2011	*

References

#18229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26462

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30277

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26618 (see below)

#62460 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60841

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76780

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398292.1 )

#26618

IJSEM 1055 2012 ( DOI 10.1099/ijs.0.032268-0 , PubMed 21685251 )

* These data were automatically processed and therefore are not curated

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Gulosibacter chungangensis strain KCTC 13959

Gulosibacter chungangensis strain KCTC 13959

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