Strain identifier
BacDive ID: 7330
Type strain: 
Species: Gulosibacter chungangensis
Strain history: <- KCTC; KCTC 13959
NCBI tax ID(s): 979746 (species)
version 8.1 (current version)
General
@ref: 18229
BacDive-ID: 7330
DSM-Number: 26462
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Gulosibacter chungangensis DSM 26462 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 979746
- Matching level: species
strain history
- @ref: 18229
- history: <- KCTC; KCTC 13959
doi: 10.13145/bacdive7330.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Gulosibacter
- species: Gulosibacter chungangensis
- full scientific name: Gulosibacter chungangensis Park et al. 2012
@ref: 18229
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Gulosibacter
species: Gulosibacter chungangensis
full scientific name: Gulosibacter chungangensis Park et al. 2012
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30277 | positive | 1-1.3 µm | 0.3-0.5 µm | rod-shaped | ||
| 69480 | no | 91.612 | ||||
| 69480 | positive | 100 |
colony morphology
- @ref: 62460
- incubation period: 1 day
pigmentation
- @ref: 30277
- production: yes
Culture and growth conditions
culture medium
- @ref: 18229
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18229 | positive | growth | 37 | mesophilic |
| 30277 | positive | growth | 15-40 | |
| 30277 | positive | optimum | 37 | mesophilic |
| 62460 | positive | growth | 30-37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30277 | positive | growth | 06-10 | alkaliphile |
| 30277 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 30277
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30277 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.997 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30277 | NaCl | positive | growth | 0-5 % |
| 30277 | NaCl | positive | optimum | 1 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30277 | 28757 | fructose | + | carbon source |
| 30277 | 26546 | rhamnose | + | carbon source |
| 30277 | 30911 | sorbitol | + | carbon source |
| 30277 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30277 | catalase | + | 1.11.1.6 |
| 30277 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 18229 | marine sediment | Yellow Sea, near Oh Island | Republic of Korea | KOR | Asia | |
| 62460 | Sediment | Yellow Sea,Oh Island | Republic of Korea | KOR | Asia | 2009-10-22 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_92996.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2014;97_10599;98_31634;99_92996&stattab=map
- Last taxonomy: Gulosibacter chungangensis
- 16S sequence: HQ268603
- Sequence Identity:
- Total samples: 149
- soil counts: 30
- aquatic counts: 14
- animal counts: 100
- plant counts: 5
Safety information
risk assessment
- @ref: 18229
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18229
- description: Gulosibacter chungangensis strain CAU 9625 16S ribosomal RNA gene, partial sequence
- accession: HQ268603
- length: 1451
- database: ena
- NCBI tax ID: 979746
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gulosibacter chungangensis KCTC 13959 | GCA_008831155 | contig | ncbi | 979746 |
| 66792 | Gulosibacter chungangensis strain KCTC 13959 | 979746.3 | wgs | patric | 979746 |
GC content
- @ref: 18229
- GC-content: 66.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 92.528 | no |
| flagellated | no | 97.841 | no |
| gram-positive | yes | 93.053 | no |
| anaerobic | no | 99.092 | yes |
| halophile | no | 87.34 | yes |
| spore-forming | no | 93.159 | yes |
| thermophile | no | 97.898 | yes |
| glucose-util | yes | 80.324 | no |
| aerobic | yes | 91.147 | yes |
| glucose-ferment | no | 82.909 | no |
External links
@ref: 18229
culture collection no.: DSM 26462, CAU 9625, CCUG 60841, KCTC 13959
straininfo link
- @ref: 76780
- straininfo: 398292
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21685251 | Gulosibacter chungangensis sp. nov., an actinomycete isolated from a marine sediment, and emended description of the genus Gulosibacter. | Park MH, Traiwan J, Jung MY, Kim W | Int J Syst Evol Microbiol | 10.1099/ijs.0.032268-0 | 2011 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 32809927 | Gulosibacter macacae sp. nov., a novel actinobacterium isolated from Macaca mulatta faeces. | Li G, Li Q, Chen X, Jiang L, Zhang K, An D, Lang L, Jiang Y, Han L, Huang X, Jiang C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004389 | 2020 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Glycolipids/chemistry, Macaca mulatta/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 18229 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26462) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26462 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30277 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26618 | 28776041 | |
| 62460 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 60841) | https://www.ccug.se/strain?id=60841 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 76780 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398292.1 | StrainInfo: A central database for resolving microbial strain identifiers |