Name: Curtobacterium ammoniigenes B55
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7324

Type strain:

Species: Curtobacterium ammoniigenes

Strain Designation: B55

Culture col. no.: DSM 21577, JCM 14609, NBRC 101786, VTCC D6-11, CIP 109639

Strain history: CIP <- 2007, NBRC <- VTCC D6-11 <- T. Aizawa, Nihon Univ., Kanagawa, Japan: strain B55 <- N.B. Ve, Can Tho Univ., Can Tho, Vietnam

NCBI tax ID(s): 1223517 (strain), 395387 (species)

SI-ID 309439

JCM 14609, NBRC 101786, CIP 109639

Other strains from Curtobacterium ammoniigenes

C. ammoniigenes JCM 14610, NBRC 101790, VTCC D6-15
C. ammoniigenes JCM 14611, NBRC 101788, VTCC D6-13
C. ammoniigenes JCM 14612, NBRC 101789, VTCC D6-14

Section

Curtobacterium ammoniigenes B55 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Stem of Ludwigia adscendens inhabiting acidic swamps in actual acid sulfate soil areas.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Curtobacterium*
	Species	**Curtobacterium ammoniigenes**
	Full Scientific Name (LPSN)	Curtobacterium ammoniigenes Aizawa et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31969]	Gram stain	positive
[Ref.: #116341]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31969]	Cell shape	rod-shaped
[Ref.: #116341]	Cell shape	rod-shaped

[Ref.: #31969]	Motility	no
[Ref.: #116341]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15819]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #15819]

Culture medium growth

[Ref.: #15819]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15819]

Culture medium composition

expand / minimize

[Ref.: #37654]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37654]

Culture medium growth

[Ref.: #37654]

Culture medium composition

expand / minimize

[Ref.: #116341]

Culture medium

CIP Medium 72

[Ref.: #116341]

Culture medium growth

[Ref.: #116341]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15819]	growth	28 °C
[Ref.: #31969]	growth	15-37 °C
[Ref.: #31969]	optimum	21 °C
[Ref.: #37654]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15819]	Temperature range	mesophilic
[Ref.: #31969]	Temperature range	psychrophilic
[Ref.: #37654]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31969]			optimum	4
[Ref.: #31969]			growth	3.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31969]	Oxygen tolerance	aerobe
[Ref.: #116341]	Oxygen tolerance	obligate aerobe

[Ref.: #31969]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

[Ref.: #67770]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31969]	arabinose ChEBI	+	carbon source
[Ref.: #31969]	esculin ChEBI	+	hydrolysis
[Ref.: #31969]	gluconate ChEBI	+	carbon source
[Ref.: #31969]	L-alaninamide ChEBI	+	carbon source
[Ref.: #31969]	L-arabitol ChEBI	+	carbon source
[Ref.: #31969]	lactose ChEBI	+	carbon source
[Ref.: #31969]	mannitol ChEBI	+	carbon source
[Ref.: #31969]	melibiose ChEBI	+	carbon source
[Ref.: #116341]	nitrate ChEBI	-	reduction
[Ref.: #116341]	nitrite ChEBI	-	reduction
[Ref.: #31969]	rhamnose ChEBI	+	carbon source
[Ref.: #31969]	ribose ChEBI	+	carbon source
[Ref.: #31969]	sorbitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116341]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116341]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116341]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116341]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116341]	12021	-	-	+	+	-	+	-	-	-	-	+	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15819]	Sample type/isolated from	Stem of Ludwigia adscendens inhabiting acidic swamps in actual acid sulfate soil areas
[Ref.: #15819]	Host species	Ludwigia adscendens
[Ref.: #15819]	Country	Vietnam
[Ref.: #15819]	Country ISO 3 Code	VNM
[Ref.: #15819]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Stem of Ludwigia adscendens inhabiting acidic swamps in actual acid sulfate soil areas
[Ref.: #67770]	Host species	Ludwigia adscendens
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia

[Ref.: #116341]	Sample type/isolated from	Plant, Ludwigia adscendens
[Ref.: #116341]	Country	Vietnam
[Ref.: #116341]	Country ISO 3 Code	VNM
[Ref.: #116341]	Continent	Asia
[Ref.: #116341]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB266597 (>99% sequence identity) for Curtobacterium ammoniigenes from Microbeatlas

Aquatic Samples	308
Soil Samples	286
Animal Samples	329
Plant Samples	838
Total Samples	1761

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15819]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116341]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15819]	Curtobacterium ammoniigenes gene for 16S rRNA, partial sequence, strain: NBRC 101786	AB266597	1406	ENA	395387 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Curtobacterium ammoniigenes NBRC 101786	GCA_001571045	contig	GenBank	1223517 tax ID
[Ref.: #66792]	Curtobacterium ammoniigenes NBRC 101786	1223517.3	wgs	PATRIC	1223517 tax ID	*
[Ref.: #66792]	Curtobacterium ammoniigenes NBRC 101786	2690315830	draft	JGI IMG/M	1223517 tax ID	*

[Ref.: #15819]	GC-content	68.8 mol%
[Ref.: #67770]	GC-content	68.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Curtobacterium ammoniigenes NBRC 101786 PATRIC: 1223517.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Curtobacterium ammoniigenes NBRC 101786 PATRIC: 1223517.3
[Ref.: #69480]	motile	no	64.936	yes
[Ref.: #69480]	gram-positive	yes	92.77	yes
[Ref.: #69480]	anaerobic	no	99.292	yes
[Ref.: #69480]	aerobic	yes	90.227	yes
[Ref.: #69480]	halophile	no	92.296	no
[Ref.: #69480]	spore-forming	no	89.036	no
[Ref.: #69480]	thermophile	no	98.174	yes
[Ref.: #69480]	glucose-util	yes	88.408	no
[Ref.: #69480]	flagellated	no	95.59	yes
[Ref.: #69480]	glucose-ferment	no	80.799	no

Availability in culture collections External links

[Ref.: #15819]

Culture collection no.

DSM 21577, JCM 14609, NBRC 101786, VTCC D6-11, CIP 109639

[Ref.: #76774]

SI-ID 309439

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Curtobacterium ammoniigenes sp. nov., an ammonia-producing bacterium isolated from plants inhabiting acidic swamps in actual acid sulfate soil areas of Vietnam.	Aizawa T, Ve NB, Kimoto KI, Iwabuchi N, Sumida H, Hasegawa I, Sasaki S, Tamura T, Kudo T, Suzuki KI, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.64731-0	2007	*

References

#15819

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21577

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31969

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28224 (see below)

#37654 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76774

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309439.1 )

#116341 Collection of Institut Pasteur ; Curators of the CIP; CIP 109639

#28224

IJSEM 1447 2007 ( DOI 10.1099/ijs.0.64731-0 , PubMed 17625173 )

* These data were automatically processed and therefore are not curated

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Curtobacterium ammoniigenes NBRC 101786

Curtobacterium ammoniigenes NBRC 101786

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