Clavibacter michiganensis (DSM 20134, ATCC 10202, white)

Name: Clavibacter michiganensis (DSM 20134, ATCC 10202, white)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7287

Type strain

Strain Designation white

Culture col. no. DSM 20134 ATCC 10202 white

NCBI tax ID(s) 28447

Special Collections DSMZ

History <- ATCC <- P.A. Ark, strain white

Links

Clavibacter michiganensis white is a plant pathogen of the family Microbacteriaceae.

plant pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 35190

ATCC 10202,DSM 20134

@ref 20215

Last LPSN update 2026-02-09 11:19:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Clavibacter

Species Clavibacter michiganensis

Full scientific name Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984

Synonyms (3)

Corynebacterium michiganense
Clavibacter michiganense
"Bacterium michiganense"

BacDive ID	Other strains from **Clavibacter michiganensis** (13)	Type strain
7289	C. michiganensis S 05, SO5, CCUG 23363, CIP 104846, DSM 46364, ... (type strain)
7288	C. michiganensis DSM 46294, CCM 1635, IMET 10903, NCPPB 170, ...
144243	C. michiganensis CCUG 23902, LMG 5594
144244	C. michiganensis CCUG 23903, LMG 5643
144245	C. michiganensis CCUG 23904, LMG 5724
144246	C. michiganensis CCUG 23905, LMG 5727
144247	C. michiganensis CCUG 23906, LMG 5735
145663	C. michiganensis CCUG 29174
157324	C. michiganensis IMI 347333
157325	C. michiganensis IMI 347342
157326	C. michiganensis IMI 347343
157327	C. michiganensis IMI 347345
157328	C. michiganensis IMI 347346

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		92.5
125439		90.1	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8559	CORYNEBACTERIUM AGAR (DSMZ Medium 53)		Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
8559	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8559	positive	growth	28
8559	positive	growth	25

Physiology and metabolism

Murein

@ref	Murein short key	Type
8559	B07	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
8559		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM979615v1 assembly for Clavibacter michiganensis subsp. michiganensis ATCC 10202	contig	GCA_009796155	33013.242	33013	6.73

GC content

8559

GC-content (mol%)70.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clavibacter michiganensis subsp. michiganensis ATCC 10202
NCBI: GCA_009796155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.30	no
125439	motility	BacteriaNetⓘ	yes	60.10	no
125439	gram_stain	BacteriaNetⓘ	positive	90.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clavibacter michiganensis subsp. michiganensis strain ATCC 10202
PATRIC: 33013.242

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.94	no
125438	anaerobic	anaerobicⓘ	no	95.59	no
125438	spore-forming	spore-formingⓘ	no	78.07	no
125438	aerobic	aerobicⓘ	yes	87.10	no
125438	thermophilic	thermophileⓘ	no	94.88	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Copper-fixed quat: a hybrid nanoparticle for application as a locally systemic pesticide (LSP) to manage bacterial spot disease of tomato.	Ozcan A, Young M, Lee B, Liao YY, Da Silva S, Godden D, Colee J, Huang Z, Mendis HC, Campos MGN, Jones JB, Freeman JH, Paret ML, Tetard L, Santra S.	Nanoscale Adv	10.1039/d0na00917b	2021
	Rapid Detection and Quantification of Viable Cells of Pectobacterium brasiliense Using Propidium Monoazide Combined with Real-Time PCR.	Li J, Chen R, Yang R, Wei X, Xie H, Shi Y, Xie X, Chai A, Fan T, Li B, Li L.	Microorganisms	10.3390/microorganisms11112808	2023
	Cloning, nucleotide sequence, and expression in Escherichia coli of levansucrase genes from the plant pathogens Pseudomonas syringae pv. glycinea and P. syringae pv. phaseolicola.	Hettwer U, Jaeckel FR, Boch J, Meyer M, Rudolph K, Ullrich MS.	Appl Environ Microbiol	10.1128/aem.64.9.3180-3187.1998	1998
Enzymology	Synthesis, toxicity evaluation and determination of possible mechanisms of antimicrobial effect of arabinogalactane-capped selenium nanoparticles.	Lesnichaya M, Perfileva A, Nozhkina O, Gazizova A, Graskova I	J Trace Elem Med Biol	10.1016/j.jtemb.2021.126904	2021
	Bacterial Canker of Tomato: Revisiting a Global and Economically Damaging Seedborne Pathogen.	Peritore-Galve FC, Tancos MA, Smart CD	Plant Dis	10.1094/PDIS-08-20-1732-FE	2021
Stress	Effects of different heat treatments on lysozyme quantity and antimicrobial activity of jenny milk.	Cosentino C, Labella C, Elshafie HS, Camele I, Musto M, Paolino R, D'Adamo C, Freschi P	J Dairy Sci	10.3168/jds.2015-10702	2016
Phylogeny	[Identification and Antagonistic Properties of the Soil Streptomycete Streptomyces sp. 100].	Biliavska LA, Efimenko TA, Efremenkova OV, Koziritska VY, Iutynska GA	Mikrobiol Z		2016
Pathogenicity	Use of buckwheat seed protease inhibitor gene for improvement of tobacco and potato plant resistance to biotic stress.	Khadeeva NV, Kochieva EZ, Tcherednitchenko MY, Yakovleva EY, Sydoruk KV, Bogush VG, Dunaevsky YE, Belozersky MA	Biochemistry (Mosc)	10.1134/s0006297909030031	2009
	First Report of Bacterial Canker of Tomato Caused by Clavibacter michiganensis subsp. michiganensis in Korea.	Myung IS, Kim DG, An SH, Lee YK, Kim WG	Plant Dis	10.1094/PDIS-92-10-1472A	2008
Phylogeny	Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa.	Dopfer H, Stackebrandt E, Fiedler F	J Gen Microbiol	10.1099/00221287-128-8-1697	1982

References

#8559	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20134
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Clavibacter michiganensis (DSM 20134, ATCC 10202, white)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Murein

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009796155

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media