Name: Clavibacter michiganensis white
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7287

Type strain:

Species: Clavibacter michiganensis

Strain Designation: white

Culture col. no.: DSM 20134, ATCC 10202

Strain history: <- ATCC <- P.A. Ark, strain white

NCBI tax ID(s): 28447 (species)

SI-ID 35190

ATCC 10202, DSM 20134

Other strains from Clavibacter michiganensis

C. michiganensis S 05, SO5, CCUG 23363, CIP 104846, ... (type strain)
C. michiganensis DSM 46294, CCM 1635, IMET 10903, ...
C. michiganensis CCUG 23902, LMG 5594
C. michiganensis CCUG 23903, LMG 5643
C. michiganensis CCUG 23904, LMG 5724
C. michiganensis CCUG 23905, LMG 5727
C. michiganensis CCUG 23906, LMG 5735
C. michiganensis CCUG 29174
C. michiganensis IMI 347333
C. michiganensis IMI 347342
C. michiganensis IMI 347343
C. michiganensis IMI 347345
C. michiganensis IMI 347346

Section

Clavibacter michiganensis white is a mesophilic plant pathogen of the family Microbacteriaceae.

mesophilic
plant pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Clavibacter*
	Species	**Clavibacter michiganensis**
	Full Scientific Name (LPSN)	Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984

	Synonym	"Bacterium* michiganense"*
	Synonym	Clavibacter michiganense
	Synonym	Corynebacterium michiganense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.501

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8559]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8559]

Culture medium growth

[Ref.: #8559]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8559]

Culture medium composition

expand / minimize

[Ref.: #8559]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #8559]

Culture medium growth

[Ref.: #8559]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8559]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8559]			growth	28 °C
[Ref.: #8559]			growth	25 °C

[Ref.: #8559]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

[Ref.: #8559]	Murein short key	B07
[Ref.: #8559]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8559]	Pathogenicity (plant)	yes
[Ref.: #8559]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis ATCC 10202	GCA_009796155	contig	GenBank	33013 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis strain ATCC 10202	33013.242	wgs	PATRIC	33013 tax ID	*

[Ref.: #8559]

GC-content

70.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clavibacter michiganensis subsp. michiganensis strain ATCC 10202 PATRIC: 33013.242
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clavibacter michiganensis subsp. michiganensis strain ATCC 10202 PATRIC: 33013.242
[Ref.: #69480]	gram-positive	yes	93.876	no
[Ref.: #69480]	anaerobic	no	99.267	no
[Ref.: #69480]	halophile	no	82.778	no
[Ref.: #69480]	spore-forming	no	95.399	no
[Ref.: #69480]	glucose-util	yes	87.28	no
[Ref.: #69480]	motile	no	90.979	no
[Ref.: #69480]	flagellated	no	97.926	no
[Ref.: #69480]	aerobic	yes	93.217	no
[Ref.: #69480]	thermophile	no	99.05	no
[Ref.: #69480]	glucose-ferment	no	90.989	no

Availability in culture collections External links

[Ref.: #8559]

Culture collection no.

DSM 20134, ATCC 10202

[Ref.: #76737]

SI-ID 35190

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Synthesis, toxicity evaluation and determination of possible mechanisms of antimicrobial effect of arabinogalactane-capped selenium nanoparticles.	Lesnichaya M, Perfileva A, Nozhkina O, Gazizova A, Graskova I	J Trace Elem Med Biol	10.1016/j.jtemb.2021.126904	2021	*
Stress	Effects of different heat treatments on lysozyme quantity and antimicrobial activity of jenny milk.	Cosentino C, Labella C, Elshafie HS, Camele I, Musto M, Paolino R, D'Adamo C, Freschi P	J Dairy Sci	10.3168/jds.2015-10702	2016	*
Phylogeny	[Identification and Antagonistic Properties of the Soil Streptomycete Streptomyces sp. 100].	Biliavska LA, Efimenko TA, Efremenkova OV, Koziritska VY, Iutynska GA	Mikrobiol Z		2016	*
Pathogenicity	Use of buckwheat seed protease inhibitor gene for improvement of tobacco and potato plant resistance to biotic stress.	Khadeeva NV, Kochieva EZ, Tcherednitchenko MY, Yakovleva EY, Sydoruk KV, Bogush VG, Dunaevsky YE, Belozersky MA	Biochemistry (Mosc)	10.1134/s0006297909030031	2009	*
Phylogeny	Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa.	Dopfer H, Stackebrandt E, Fiedler F	J Gen Microbiol	10.1099/00221287-128-8-1697	1982	*
	Bacterial Canker of Tomato: Revisiting a Global and Economically Damaging Seedborne Pathogen.	Peritore-Galve FC, Tancos MA, Smart CD	Plant Dis	10.1094/PDIS-08-20-1732-FE	2021	*
	First Report of Bacterial Canker of Tomato Caused by Clavibacter michiganensis subsp. michiganensis in Korea.	Myung IS, Kim DG, An SH, Lee YK, Kim WG	Plant Dis	10.1094/PDIS-92-10-1472A	2008	*

References

#8559

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20134

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76737

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35190.1 )

* These data were automatically processed and therefore are not curated

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Clavibacter michiganensis subsp. michiganensis strain ATCC 10202

Clavibacter michiganensis subsp. michiganensis strain ATCC 10202

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