Name: Clavibacter michiganensis S 05
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7289

Type strain:

Species: Clavibacter michiganensis

Strain Designation: S 05, SO5

Culture col. no.: CCUG 23363, CIP 104846, DSM 46364, ICPB CM 177, IMET 11518, LMG 7333, NCPPB 2979, PDDCC 2550, JCM 9665, CFBP 2352, CFBP 4999, ICMP 2550, IMSNU 21316, KACC 20122, KCCM 41108, VKM Ac-1403, VTT E-97058

Strain history: ICMP 2550 <-- D. W. Dye CC31 <-- ICPB CM177 <-- Z. Klement SO5.

NCBI tax ID(s): 28447 (species)

Other strains from Clavibacter michiganensis

C. michiganensis white, DSM 20134, ATCC 10202
C. michiganensis DSM 46294, CCM 1635, IMET 10903, ...
C. michiganensis CCUG 23902, LMG 5594
C. michiganensis CCUG 23903, LMG 5643
C. michiganensis CCUG 23904, LMG 5724
C. michiganensis CCUG 23905, LMG 5727
C. michiganensis CCUG 23906, LMG 5735
C. michiganensis CCUG 29174
C. michiganensis IMI 347333
C. michiganensis IMI 347342
C. michiganensis IMI 347343
C. michiganensis IMI 347345
C. michiganensis IMI 347346

Section

Clavibacter michiganensis S 05 is a mesophilic plant pathogen that was isolated from Lycopersicon lycopersicum.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	15-12-2021 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Micrococcales
	Family	Microbacteriaceae
	Genus	Clavibacter
	Species	Clavibacter michiganensis
	Full Scientific Name (PNU)	Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984

	Synonym	Bacterium michiganense
	Synonym	Corynebacterium michiganense
	Synonym	Clavibacter michiganense

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12537]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #12537]

Culture medium growth

[Ref.: #12537]

Culture medium link

Medium recipe at BacMedia

[Ref.: #12537]

Culture medium composition

expand / minimize

[Ref.: #12537]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #12537]

Culture medium growth

[Ref.: #12537]

Culture medium link

Medium recipe at BacMedia

[Ref.: #12537]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12537]			growth	25 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #12537]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #12537]	Murein short key	B07
[Ref.: #12537]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

[Ref.: #67770]

Observation

quinones: MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #47797]	Sample type/isolated from	Lycopersicon lycopersicum
[Ref.: #47797]	Sampling date	1957
[Ref.: #47797]	Country	Hungary
[Ref.: #47797]	Country ISO 3 Code	HUN
[Ref.: #47797]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Tomato (Lycopercicon esculentum)
[Ref.: #67770]	Host species	Lycopercicon esculentum
[Ref.: #67770]	Country	Hungary
[Ref.: #67770]	Country ISO 3 Code	HUN
[Ref.: #67770]	Continent	Europe

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12537]	Pathogenicity (plant)	yes
[Ref.: #12537]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Clavibacter michiganensis subsp. michiganensis partial 16S rRNA gene, type strain DSM 46364	AM410696	1471	ENA	33013 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. michiganensis strain ICMP 2550 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ205139	516	ENA	33013 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. michiganensis partial 16S rRNA gene, strain LMG7333T	FR728336	452	ENA	33013 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. michiganensis strain LMG 7333 16S ribosomal RNA gene, partial sequence	JN603277	1359	ENA	33013 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. michiganensis strain LMG 7333 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	JN603289	773	ENA	33013 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis michiganensis LGM 7333 16S-23S rRNA spacer region	U09380	481	ENA	28447 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis michiganensis LMG 7333 16S rRNA	U09762	1491	ENA	28447 tax ID	*
[Ref.: #12537]	Clavibacter michiganensis strain DSM 46364 16S ribosomal RNA, partial sequence	NR_115040	1471	GenBank	28447 tax ID
[Ref.: #67770]	C.michiganense (DSM 46364) 16S rRNA gene	X77435	1471	ENA	28447 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis LMG 7333	GCA_002240575	contig	GenBank	33013 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis CFBP 4999	GCA_003697295	scaffold	GenBank	33013 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis	33013.123	wgs	PATRIC	33013 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis subsp. michiganensis strain CFBP 4999	33013.190	wgs	PATRIC	33013 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis CFBP 4999	2846599232	draft	JGI IMG/M	28447 tax ID	*
[Ref.: #67770]	Clavibacter michiganensis strain VKM Ac-1403, whole genome shotgun sequencing project	FVZG00000000		GenBank	28447 tax ID

[Ref.: #67770]

GC-content

72.7 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #12537]

Culture collection no.

CCUG 23363, CIP 104846, DSM 46364, ICPB CM 177, IMET 11518, LMG 7333, NCPPB 2979, PDDCC 2550, JCM 9665, CFBP 2352, CFBP 4999, ICMP 2550, IMSNU 21316, KACC 20122, KCCM 41108, VKM Ac-1403, VTT E-97058

[Ref.: #20218]

Associated Passport(s) in StrainInfo

149921, 7382, 170284, 7379, 7384, 131784

References

#12537

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46364

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#47797 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23363

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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