Clavibacter michiganensis (DSM 46294, CCM 1635, IMET 10903)

Name: Clavibacter michiganensis (DSM 46294, CCM 1635, IMET 10903)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7288

Type strain

Culture col. no. DSM 46294 CCM 1635 IMET 10903 NCPPB 170 CCUG 23855 1 more

NCBI tax ID(s) 28447

Special Collections DSMZ CCUG

History <- IMET <- CCM <- R. de Vicente Jordana

Links

Clavibacter michiganensis DSM 46294 is a mesophilic plant pathogen of the family Microbacteriaceae.

mesophilic plant pathogen 16S sequence

Name and taxonomic classification

SI-ID 1777

LMG 3679,CCM 1635,IMET 10903,NCPPB 170,CCUG 23855,DSM 46294

@ref 20215

Last LPSN update 2026-02-09 11:19:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Clavibacter

Species Clavibacter michiganensis

Full scientific name Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984

Synonyms (3)

Corynebacterium michiganense
Clavibacter michiganense
"Bacterium michiganense"

BacDive ID	Other strains from **Clavibacter michiganensis** (13)	Type strain
7289	C. michiganensis S 05, SO5, CCUG 23363, CIP 104846, DSM 46364, ... (type strain)
7287	C. michiganensis white, DSM 20134, ATCC 10202
144243	C. michiganensis CCUG 23902, LMG 5594
144244	C. michiganensis CCUG 23903, LMG 5643
144245	C. michiganensis CCUG 23904, LMG 5724
144246	C. michiganensis CCUG 23905, LMG 5727
144247	C. michiganensis CCUG 23906, LMG 5735
145663	C. michiganensis CCUG 29174
157324	C. michiganensis IMI 347333
157325	C. michiganensis IMI 347342
157326	C. michiganensis IMI 347343
157327	C. michiganensis IMI 347345
157328	C. michiganensis IMI 347346

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12509	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
12509	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12509	positive	growth	25	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68379	gelatinase	-		from API Coryne
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
47865	-	-	-	-	-	+	+	-	+	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
12509		1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Clavibacter michiganensis subsp. michiganensis partial 16S rRNA gene, strain LMG3679	FR728295	451		33013

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	De-novo design of antimicrobial peptides for plant protection.	Zeitler B, Herrera Diaz A, Dangel A, Thellmann M, Meyer H, Sattler M, Lindermayr C.	PLoS One	10.1371/journal.pone.0071687	2013
	Two new psychrotolerant Massilia species inhibit plant pathogens Clavibacter and Curtobacterium.	Sedlacek I, Holochova P, Sedlar K, Stankova E, Sedo O, Kralova S, Umair M, Koublova V, Svec P.	Sci Rep	10.1038/s41598-025-09734-0	2025
Enzymology	Multiplex real-time PCR for the detection of Clavibacter michiganensis subsp. michiganensis, Pseudomonas syringae pv. tomato and pathogenic Xanthomonas species on tomato plants.	Penazova E, Dvorak M, Ragasova L, Kiss T, Pecenka J, Cechova J, Eichmeier A.	PLoS One	10.1371/journal.pone.0227559	2020

References

#12509	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46294
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47865	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23855
#68379	Automatically annotated from API Coryne .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clavibacter michiganensis (DSM 46294, CCM 1635, IMET 10903)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Enzymes

API coryne

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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