Name: Agromyces aurantiacus DSM 14598
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7269

Type strain:

Species: Agromyces aurantiacus

Culture col. no.: DSM 14598, AS 4.1717, CCTCC 001012, YIM 21741, JCM 12113, BCRC 16310, CCTCC AA 001012, CGMCC 4.1717, CIP 107976, IAM 15154, KCTC 9967

Strain history: AS 4.1717 <-- C.-L. Jiang YIM 21741.

NCBI tax ID(s): 165814 (species)

Section

Agromyces aurantiacus DSM 14598 is a mesophilic bacterium that was isolated from primeval forest soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces aurantiacus**
	Full Scientific Name (PNU)	Agromyces aurantiacus Li et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 2

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 3

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 4

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 5

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 6

[Ref.: #18388]	Colony color	Saffron yellow (1017)
[Ref.: #18388]	Incubation period	10-14 days
[Ref.: #18388]	Cultivation medium used	ISP 7

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 2

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 3

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 4

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 5

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 6

[Ref.: #18388]	Multicellular complex forming ability	no
[Ref.: #18388]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5401]

Culture medium

ISP MEDIUM 2 WITH 5% NaCl (DSMZ Medium 636)

[Ref.: #5401]

Culture medium growth

[Ref.: #5401]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5401]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 2

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 3

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 4

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 5

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 6

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #18388]

Culture medium

ISP 7

[Ref.: #18388]

Culture medium growth

[Ref.: #18388]

Culture medium composition

expand / minimize

[Ref.: #38247]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38247]

Culture medium growth

[Ref.: #38247]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5401]	growth	28 °C
[Ref.: #18388]	optimum	28 °C
[Ref.: #38247]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #5401]	Temperature range	mesophilic
[Ref.: #18388]	Temperature range	mesophilic
[Ref.: #38247]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.964

[Ref.: #67770]

Observation

quinones: MK-12, MK-13

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18388]	arabinose ChEBI	+
[Ref.: #18388]	cellulose ChEBI	+
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18388]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18388]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #18388]	mannitol ChEBI	+
[Ref.: #18388]	myo-inositol ChEBI	+/-
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #18388]	raffinose ChEBI	+
[Ref.: #18388]	rhamnose ChEBI	+
[Ref.: #18388]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18388]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18388]	74	-	-	+	-	-	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18388]	98	not determinedn.d.	-	+	-	-	+	+	+	+	-	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5401]	Sample type/isolated from	primeval forest soil
[Ref.: #5401]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #5401]	Country	China
[Ref.: #5401]	Country ISO 3 Code	CHN
[Ref.: #5401]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a primeval forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xishuangbanna, Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5401]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #18388]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5401]	Agromyces aurantiacus 16S ribosomal RNA gene, partial sequence	AF389342	1464	ENA	165814 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agromyces aurantiacus DSM 14598	GCA_016907355	contig	GenBank	165814 tax ID	*
[Ref.: #66792]	Agromyces aurantiacus strain DSM 14598	165814.3	wgs	PATRIC	165814 tax ID	*
[Ref.: #66792]	Agromyces aurantiacus DSM 14598	2893554490	draft	JGI IMG/M	165814 tax ID	*

[Ref.: #5401]	GC-content	72.8 mol%
[Ref.: #67770]	GC-content	72.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agromyces aurantiacus strain DSM 14598 PATRIC: 165814.3
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	spore-forming	no	99.964	yes
[Ref.: #69480]	anaerobic	no	99.415	no
[Ref.: #69480]	thermophile	no	99.922	yes
[Ref.: #69480]	motile	no	84.586	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agromyces aurantiacus strain DSM 14598 PATRIC: 165814.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #5401]

Culture collection no.

DSM 14598, AS 4.1717, CCTCC 001012, YIM 21741, JCM 12113, BCRC 16310, CCTCC AA 001012, CGMCC 4.1717, CIP 107976, IAM 15154, KCTC 9967

[Ref.: #20218]

Associated Passport(s) in StrainInfo

301836, 301834, 301835, 301837

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces soli sp. nov., isolated from farm soil.	Lee M, Ten LN, Woo SG, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.021568-0	2010	*
Phylogeny	Agromyces tropicus sp. nov., isolated from soil.	Thawai C, Tanasupawat S, Suwanborirux K, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.021774-0	2010	*
Phylogeny	Agromyces aurantiacus sp. nov., isolated from a Chinese primeval forest.	Li WJ, Zhang LP, Xu P, Cui XL, Xu LH, Zhang Z, Schumann P, Stackebrandt E, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.02350-0	2003	*

References

#5401

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14598

#18388

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38247 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Agromyces aurantiacus strain DSM 14598

Agromyces aurantiacus strain DSM 14598

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