Name: Terasakiella pusilla IF 6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7228

Type strain:

Species: Terasakiella pusilla

Strain Designation: IF 6, IF6

Culture col. no.: DSM 6293, ATCC 33338, IAM 14442, IFO 13613, NBRC 13613, NCIMB 2229, JCM 21225, CIP 103382, LMG 5308, LMG 7372

Strain history: CIP <- 1990, IFO <- Y. Terasaki: strain IF6

NCBI tax ID(s): 1123355 (strain), 64973 (species)

SI-ID 3667

LMG 7372, ATCC 33338, IFO 13613, LMG 5308, NCMB 2229, CIP 103382, DSM 6293, IAM 14442, NCIMB 2229, NBRC 13613, JCM 21225

Special Collections

Section

When using BacDive for research please cite our paper

Terasakiella pusilla IF 6 is a mesophilic bacterium that was isolated from putrid marine shellfish.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Terasakiellaceae*
	Genus	*Terasakiella*
	Species	**Terasakiella pusilla**
	Full Scientific Name (LPSN)	Terasakiella pusilla (Terasaki 1973) Satomi et al. 2002

	Synonym	"Spirillum* pusillum"*
	Synonym	Oceanospirillum pusillum

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %97.967
[Ref.: #125439]	Gram stain	negative Confidence in %96.2

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2577]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2577]

Culture medium growth

[Ref.: #2577]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2577]

Culture medium composition

expand / minimize

[Ref.: #37142]

Culture medium

Marine agar (MA)

[Ref.: #37142]

Culture medium growth

[Ref.: #37142]

Culture medium composition

expand / minimize

[Ref.: #122065]

Culture medium

CIP Medium 13

[Ref.: #122065]

Culture medium growth

[Ref.: #122065]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2577]	growth	25 °C
[Ref.: #37142]	growth	25 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.218
[Ref.: #125439]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2577]	Sample type/isolated from	putrid marine shellfish

[Ref.: #67770]	Sample type/isolated from	Marine shellfish

[Ref.: #122065]	Sample type/isolated from	Other, Mussel, putrid infusion
[Ref.: #122065]	Geographic location (country and/or sea, region)	Hiroshima
[Ref.: #122065]	Country	Japan
[Ref.: #122065]	Country ISO 3 Code	JPN
[Ref.: #122065]	Continent	Asia
[Ref.: #122065]	Isolation date	1961
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Other	#Decomposing animal
#Host	#Invertebrates (Other)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB680460 (>99% sequence identity) for Terasakiella pusilla subclade from Microbeatlas

Aquatic Samples	509
Soil Samples	39
Animal Samples	42
Plant Samples	23
Total Samples	613

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2577]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122065]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2577]	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain: IFO 13613	AB006768	1429	GenBank ENA	64973 tax ID
[Ref.: #20218]	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain:IFO 13613	AB000482	1318	GenBank ENA	64973 tax ID	*
[Ref.: #20218]	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain: NBRC 13613	AB680460	1424	GenBank ENA	64973 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Terasakiella pusilla DSM 6293	GCA_000688235	contig	GenBank ENA	1123355 tax ID
[Ref.: #66792]	Terasakiella pusilla DSM 6293	1123355.3	wgs	PATRIC	1123355 tax ID	*
[Ref.: #66792]	Terasakiella pusilla DSM 6293	2556921622	draft	JGI IMG/M	1123355 tax ID	*

[Ref.: #2577]	GC-content	45.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	50.7 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Terasakiella pusilla DSM 6293 PATRIC: 1123355.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.967	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	82.803	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.218	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	65.26	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.324	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	83.072	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Terasakiella pusilla DSM 6293 NCBI: GCA_000688235
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	63.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	96.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	63
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99

Availability in culture collections External links

[Ref.: #2577]

Culture collection no.

DSM 6293, ATCC 33338, IAM 14442, IFO 13613, NBRC 13613, NCIMB 2229, JCM 21225, CIP 103382, LMG 5308, LMG 7372

[Ref.: #76680]

SI-ID 3667

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terasakiella salincola sp. nov., a marine alphaproteobacterium isolated from seawater, and emended description of the genus Terasakiella.	Yoon J, Kang DH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002788	2018	*

References

#2577

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6293

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37142 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76680

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3667.1 )

#122065 Collection of Institut Pasteur ; Curators of the CIP; CIP 103382

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Terasakiella pusilla DSM 6293

Terasakiella pusilla DSM 6293

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